Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-30/megassr/results/hub_GCA_042157955.1/fasta/hub_GCA_042157955.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           6211170
Total number of identified SSRs:                 50
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	9
5	13
6	24

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG	-	-	-	2								2
GC	-	-	-	2								2
CAC	-	-	1			1						2
CGC	-	-	1									1
CGG	-	-	2									2
GCG	-	-	2									2
GGC	-	-	1									1
GTG	-	-	1									1
CGCCG	3											3
CGCGC	1											1
CGGCG	1											1
GCCGC	1											1
GCGCC	1											1
GCGCG	1											1
GGAAG		1										1
GGCGA	1											1
GGCGC	1											1
GGGAA	1											1
TGCGC	1											1
AAGGCC	1											1
ACAGCG	1											1
ACCACG	1											1
AGCGCC	1											1
ATCACG							1					1
ATGGCC	1											1
CAACGC			1									1
CAGGAA	1											1
CAGGCG		1										1
CCAGGG	1											1
CCGAGC					1							1
CCGAGG	1											1
CCGAGT	1											1
CCTGGG	1											1
CGCCGA				1								1
CGCTGG	1											1
CGGCGC	1											1
GCCTGC	2											2
GGCGCT	1											1
GGCTCG										1		1
GTCAGG	1											1
TCGGCA	1											1
TGGCTG											1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG/CG	-	-	-	4								4
ACC/GGT	-	-	2			1						3
CCG/CGG	-	-	6									6
AAGGG/CCCTT	1	1										2
AGCGC/CGCTG	1											1
AGGCG/CCTCG	1											1
CCGCG/CGCGG	9											9
AACAGG/CCTGTT	1											1
AACGCC/CGTTGG			1									1
AAGGCC/CCTTGG	1											1
ACAGCC/CTGTGG											1	1
ACAGCG/CGCTGT	1											1
ACCACG/CGTGGT	1											1
ACCCTG/AGGGTC	1											1
ACGATC/ATCGTG							1					1
ACGCCG/CGGCGT				1								1
ACTCGG/AGTCCG	1											1
AGCCCG/CGGGCT					1					1		2
AGCGCC/CGCTGG	3											3
AGGCCC/CCTGGG	1											1
AGGCCG/CCTCGG	1											1
AGGCGC/CCTGCG	2	1										3
AGGGCC/CCCTGG	1											1
ATCGGC/ATGCCG	1											1
ATGGCC/ATGGCC	1											1
CCGGCG/CCGGCG	1											1
