Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-29/megassr/results/hub_GCA_042157325.1/fasta/hub_GCA_042157325.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           6532952
Total number of identified SSRs:                 47
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	8
5	11
6	26

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	total
CG	-	-	-	1													1
GC	-	-	-	1													1
CAC	-	-	2														2
CGC	-	-	1														1
CGG	-	-	2														2
GCG	-	-	1														1
GTG	-	-	1					1									2
CGCCG	3																3
CGCGC	1																1
CGGCG	1																1
GCCGC	1																1
GCGCG	1																1
GGAAG	1																1
GGCGA	1																1
GGCGC	1																1
GTCCG	1																1
AAGGCC	1																1
ACAGCG	1																1
ACCACG	1																1
AGCGCC	1																1
ATCACG		1															1
ATGGCC	1																1
CAACGC					1												1
CAGGAA	1																1
CAGGCG	1																1
CCAGGG	1																1
CCGAGC				1													1
CCGAGG	1																1
CCTGGG	1																1
CGCCGA		1															1
CGCTGG	1																1
CGGCGC		1															1
GCCGTC	1																1
GCCTGC	2																2
GCTCCC	1																1
GGCGCG	1																1
GGCGCT	1																1
GGCTCG									1								1
GTCAGG	1																1
TAGCGC	1																1
TGGCTG																1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	total
CG/CG	-	-	-	2													2
ACC/GGT	-	-	3					1									4
CCG/CGG	-	-	4														4
AAGGG/CCCTT	1																1
ACCGG/CCGGT	1																1
AGGCG/CCTCG	1																1
CCGCG/CGCGG	8																8
AACAGG/CCTGTT	1																1
AACGCC/CGTTGG					1												1
AAGGCC/CCTTGG	1																1
ACAGCC/CTGTGG																1	1
ACAGCG/CGCTGT	1																1
ACCACG/CGTGGT	1																1
ACCCTG/AGGGTC	1																1
ACGATC/ATCGTG		1															1
ACGCCG/CGGCGT		1															1
ACGGCG/CCGTCG	1																1
AGCCCG/CGGGCT				1					1								2
AGCGCC/CGCTGG	3																3
AGCGCT/AGCGCT	1																1
AGCGGG/CCCGCT	1																1
AGGCCC/CCTGGG	1																1
AGGCCG/CCTCGG	1																1
AGGCGC/CCTGCG	3																3
AGGGCC/CCCTGG	1																1
ATGGCC/ATGGCC	1																1
CCCGCG/CGCGGG	1																1
CCGGCG/CCGGCG		1															1
