Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-32/megassr/results/hub_GCA_042156695.1/fasta/hub_GCA_042156695.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           6602885
Total number of identified SSRs:                 51
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	9
5	12
6	27

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
GC	-	-	-	2	1									3
CAC	-	-	1											1
CCG	-	-	3											3
CGC	-	-	1											1
GCC	-	-	1											1
GCG	-	-	1											1
GGT	-	-	1											1
GTG	-	-				1								1
CGCCG	1													1
CGCGC	1													1
CGGCG	1													1
CTCGC	1													1
CTTCC		2												2
GCGCC	1													1
GCGGC	4													4
TCCCT	1													1
ACAGCC				1										1
CCAGCG	1													1
CCGAGC													1	1
CCGCCC	1													1
CCGCGC		1												1
CCTCGG	1													1
CCTGAC	1													1
CGCCAG	1													1
CGCCGA	1													1
CGCTGT	1													1
CGGGAG	1													1
CGGGCT				1										1
CGTGAT				1										1
GACAGG					1									1
GCAGGC	2													2
GCCCTG	1													1
GCGCCG	1													1
GGCCAT	1													1
GGCCCA	1													1
GGCCTT	1													1
GGCGCT		1												1
GTCACG		1												1
GTTGGC											1			1
TGCTGG		1												1
TGTTCC	1													1
TTTGAG		1												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
CG/CG	-	-	-	2	1									3
ACC/GGT	-	-	2			1								3
CCG/CGG	-	-	6											6
AAGGG/CCCTT	1	2												3
AGGCG/CCTCG	1													1
CCGCG/CGCGG	8													8
AAACTC/AGTTTG		1												1
AACAGG/CCTGTT	1													1
AACGCC/CGTTGG											1			1
AAGGCC/CCTTGG	1													1
ACAGCC/CTGTGG				1										1
ACAGCG/CGCTGT	1													1
ACAGGG/CCCTGT					1									1
ACCAGC/CTGGTG		1												1
ACCCTG/AGGGTC	1													1
ACCGTG/ACGGTC		1												1
ACGATC/ATCGTG				1										1
ACGCCG/CGGCGT	1													1
AGCCCG/CGGGCT				1									1	2
AGCGCC/CGCTGG	2	1												3
AGCGGG/CCCGCT	1													1
AGGCCC/CCTGGG	1													1
AGGCCG/CCTCGG	1													1
AGGCGC/CCTGCG	2													2
AGGGCC/CCCTGG	1													1
ATGGCC/ATGGCC	1													1
CCCCCG/CGGGGG	1													1
CCCGCG/CGCGGG		1												1
CCGGCG/CCGGCG	1													1
