Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-28/megassr/results/hub_GCA_042156045.1/fasta/hub_GCA_042156045.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           6430599
Total number of identified SSRs:                 52
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	10
5	11
6	27

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	total
CG	-	-	-	2													2
GC	-	-	-	1													1
TG	-	-	-	1													1
CAC	-	-	1						1								2
CCG	-	-	1														1
CGC	-	-	1														1
CGG	-	-	2														2
GCC	-	-	1														1
GCG	-	-	2														2
GTG	-	-	1														1
CCTGC	1																1
CGCCG	3																3
CGCGC	1																1
CGGCG	1																1
GCCGC	1																1
GCGCG	1																1
GGCGA	1																1
GGCGC	1																1
GGTGG	1																1
AAGGCC	1																1
ACAGCG	1																1
AGCGCC	1																1
ATCACG			1														1
ATGGCC	1																1
CAACGC													1				1
CAGGAA	1																1
CAGGCG	1																1
CCAGGG	1																1
CCGAGC					1												1
CCGAGG	1																1
CCGAGT	1																1
CCTGGG	1																1
CGCCGA	1																1
CGCTGG	1																1
CGGCGA		1															1
CGGCGC	1																1
CGTGTT	1																1
GCCTGC	2																2
GCTCCC	1																1
GGCGCG	1																1
GGCGCT	1																1
GGCTCG							1										1
GTCAGG	1																1
GTTCAG	1																1
TGGCTG																1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	total
AC/GT	-	-	-	1													1
CG/CG	-	-	-	3													3
ACC/GGT	-	-	2						1								3
CCG/CGG	-	-	7														7
ACCCC/GGGGT	1																1
AGGCG/CCTCG	1																1
AGGGC/CCCTG	1																1
CCGCG/CGCGG	8																8
AACACG/CGTGTT	1																1
AACAGG/CCTGTT	1																1
AACCTG/AGGTTC	1																1
AACGCC/CGTTGG													1				1
AAGGCC/CCTTGG	1																1
ACAGCC/CTGTGG																1	1
ACAGCG/CGCTGT	1																1
ACCCTG/AGGGTC	1																1
ACGATC/ATCGTG			1														1
ACGCCG/CGGCGT	1																1
ACGGCG/CCGTCG		1															1
ACTCGG/AGTCCG	1																1
AGCCCG/CGGGCT					1		1										2
AGCGCC/CGCTGG	3																3
AGCGGG/CCCGCT	1																1
AGGCCC/CCTGGG	1																1
AGGCCG/CCTCGG	1																1
AGGCGC/CCTGCG	3																3
AGGGCC/CCCTGG	1																1
ATGGCC/ATGGCC	1																1
CCCGCG/CGCGGG	1																1
CCGGCG/CCGGCG	1																1
