Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-31/megassr/results/hub_GCA_042155435.1/fasta/hub_GCA_042155435.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           6366566
Total number of identified SSRs:                 46
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	7
4	1
5	12
6	24

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
GC	-	-	-	2											2
CAC	-	-	1											1	2
CGC	-	-	1												1
CGG	-	-	2												2
GCG	-	-	1												1
GTG	-	-	1												1
GCTG	-	1													1
CGCCG	3														3
CGCGC	1														1
CGGCG	1														1
GCCGC	1														1
GCCTG	1														1
GCGCG	1														1
GGAAG	1														1
GGCGA	1														1
GGCGC	1														1
TTTCT	1														1
AAGGCC	1														1
ACAGCG	1														1
ACCGGC	1														1
AGCGCC		1													1
ATCACG		1													1
ATGGCC	1														1
CAACGC				1											1
CAGCAT	1														1
CAGGAA	1														1
CCAGGG	1														1
CCGAGC		1													1
CCGAGG	1														1
CCTGGG	1														1
CGCCGA			1												1
CGGCGA	1														1
CGGCGC	1														1
GCCTGC	2														2
GCTCCC	1														1
GGCGAG	1														1
GGCGCT	1														1
GGCTCG					1										1
GTCAGG	1														1
TGGCTG							1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
CG/CG	-	-	-	2											2
ACC/GGT	-	-	2											1	3
CCG/CGG	-	-	4												4
AGCC/CTGG	-	1													1
AAAAG/CTTTT	1														1
AAGGG/CCCTT	1														1
AGGCC/CCTGG	1														1
AGGCG/CCTCG	1														1
CCGCG/CGCGG	8														8
AACAGG/CCTGTT	1														1
AACGCC/CGTTGG				1											1
AAGGCC/CCTTGG	1														1
ACAGCC/CTGTGG							1								1
ACAGCG/CGCTGT	1														1
ACCCTG/AGGGTC	1														1
ACCGGC/CCGGTG	1														1
ACGATC/ATCGTG		1													1
ACGCCG/CGGCGT			1												1
ACGGCG/CCGTCG	1														1
AGCATC/ATGCTG	1														1
AGCCCG/CGGGCT		1			1										2
AGCGCC/CGCTGG	1	1													2
AGCGGG/CCCGCT	1														1
AGGCCC/CCTGGG	1														1
AGGCCG/CCTCGG	1														1
AGGCGC/CCTGCG	2														2
AGGGCC/CCCTGG	1														1
AGGGCG/CCCTCG	1														1
ATGGCC/ATGGCC	1														1
CCGGCG/CCGGCG	1														1
