Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-27/megassr/results/hub_GCA_042154235.1/fasta/hub_GCA_042154235.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           6443510
Total number of identified SSRs:                 49
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	8
5	10
6	29

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
GC	-	-	-	1								1
TG	-	-	-	1								1
CAC	-	-	1	1								2
CGC	-	-	1									1
CGG	-	-	2									2
GCG	-	-	2									2
GTG	-	-	1									1
CGCCG	3											3
CGCGC	1											1
CGGCG	1											1
GCCGC	1											1
GCCTG		1										1
GCGCG	1											1
GGCGA	1											1
GGCGC	1											1
AAGGCC	1											1
ACAGCG	1											1
AGCGCC	1											1
ATGGCC	1											1
CAACGC			1									1
CAGGAA	1											1
CAGGCG	1											1
CCAGGG	1											1
CCGAGC								1				1
CCGAGG	1											1
CCGTGA	1											1
CCTGGC	1											1
CCTGGG	1											1
CGCCCT	1											1
CGCCGA	1											1
CGCTGG	1											1
CGGCGC	1											1
CGTGTT		1										1
CTCGAT	1											1
GCCCAG	1											1
GCCTGC	2											2
GGCGCT	1											1
GGCTCG											1	1
GGGCGA	1											1
GTCAGG	1											1
TAGCGC	1											1
TGGCTG											1	1
TTGCCC	1											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
AC/GT	-	-	-	1								1
CG/CG	-	-	-	1								1
ACC/GGT	-	-	2	1								3
CCG/CGG	-	-	5									5
AGGCC/CCTGG		1										1
AGGCG/CCTCG	1											1
CCGCG/CGCGG	8											8
AACACG/CGTGTT		1										1
AACAGG/CCTGTT	1											1
AACGCC/CGTTGG			1									1
AAGGCC/CCTTGG	1											1
AAGGGC/CCCTTG	1											1
ACAGCC/CTGTGG											1	1
ACAGCG/CGCTGT	1											1
ACCCTG/AGGGTC	1											1
ACCGTG/ACGGTC	1											1
ACGCCG/CGGCGT	1											1
AGATCG/ATCTCG	1											1
AGCCCG/CGGGCT								1			1	2
AGCGCC/CGCTGG	3											3
AGCGCT/AGCGCT	1											1
AGGCCC/CCTGGG	2											2
AGGCCG/CCTCGG	1											1
AGGCGC/CCTGCG	3											3
AGGGCC/CCCTGG	2											2
AGGGCG/CCCTCG	2											2
ATGGCC/ATGGCC	1											1
CCGGCG/CCGGCG	1											1
