Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-25/megassr/results/hub_GCA_041983865.1/fasta/hub_GCA_041983865.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              3
Total size of examined sequences (bp):           6410152
Total number of identified SSRs:                 53
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	7
5	13
6	29

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	total
GC	-	-	-	3	1												4
CAC	-	-	1														1
CCG	-	-	1														1
GCC	-	-	1														1
GCG	-	-	1														1
GGC	-	-	2														2
GGT	-	-	1														1
CCGCG	1																1
CCTGG	1																1
CGCCG	3																3
CGCGC	1																1
CGGCA	1																1
CGGCG	1																1
CTCGC	1																1
GCGCC	1																1
GCGCG	1																1
GCGGC	2																2
ACAGCC																1	1
AGGGCG		1															1
CAACGA	1																1
CCAGCG	1																1
CCGAGC							1										1
CCGCGC	1																1
CCGGCG	1																1
CCTCGG	1																1
CCTGAC	1																1
CCTGGG	1																1
CGCCAC	1																1
CGCCAG	1																1
CGCTGT	1																1
CGGGCT				1													1
CGTCGG	1																1
CGTGAT								1									1
GAACAT			1														1
GCCCTG	1																1
GCCGGC	1																1
GCGCTG	1																1
GGCCAT	1																1
GGCCCA	1																1
GGCCTT	1																1
GGCGCT	1																1
GTCACG		1															1
GTTGGC			1														1
TGCTGG		1															1
TGGTCG	1																1
TGTTCC	1																1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	total
CG/CG	-	-	-	3	1												4
ACC/GGT	-	-	2														2
CCG/CGG	-	-	5														5
ACGGC/CCGTG	1																1
AGGCC/CCTGG	1																1
AGGCG/CCTCG	1																1
CCGCG/CGCGG	10																10
AACAGG/CCTGTT	1																1
AACATG/ATGTTC			1														1
AACGAC/CGTTGT	1																1
AACGCC/CGTTGG			1														1
AAGGCC/CCTTGG	1																1
ACAGCC/CTGTGG																1	1
ACAGCG/CGCTGT	1																1
ACCACG/CGTGGT	1																1
ACCAGC/CTGGTG		1															1
ACCCTG/AGGGTC	1																1
ACCGCC/CGGTGG	1																1
ACCGTG/ACGGTC		1															1
ACGATC/ATCGTG								1									1
ACGCCG/CGGCGT	1																1
AGCCCG/CGGGCT				1			1										2
AGCGCC/CGCTGG	4																4
AGGCCC/CCTGGG	2																2
AGGCCG/CCTCGG	1																1
AGGGCC/CCCTGG	1																1
AGGGCG/CCCTCG		1															1
ATGGCC/ATGGCC	1																1
CCCGCG/CGCGGG	1																1
CCGGCG/CCGGCG	2																2
