Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-24/megassr/results/hub_GCA_041983845.1/fasta/hub_GCA_041983845.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              2
Total size of examined sequences (bp):           6382583
Total number of identified SSRs:                 46
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	7
4	1
5	12
6	24

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
CG	-	-	-	1											1
GC	-	-	-	1											1
CAC	-	-	1												1
CCG	-	-	1												1
CGC	-	-	1												1
GCC	-	-	1												1
GCG	-	-	1												1
GGT	-	-	1												1
GTG	-	-												1	1
GCCA	-	1													1
AGAAA	1														1
CCAGG	1														1
CGCGC	1														1
CGGCG	1														1
CTCGC	1														1
CTTCC	1														1
GCGCC	2														2
GCGGC	4														4
ACAGCC				1											1
CCACAG	1														1
CCAGCG	1														1
CCGAGC					1										1
CCTCGG	1														1
CCTGAC	1														1
CGCCGT	1														1
CGCTGT	1														1
CGGGCT		1													1
CGTCGG			1												1
CGTGAT		1													1
CTCGCC	1														1
GATGCT	1														1
GCAGGC	2														2
GCCCTG	1														1
GCCGGT	1														1
GCGCCG	1														1
GGCCAT	1														1
GGCCCA	1														1
GGCCTT	1														1
GGCGCT		1													1
GTTGGC				1											1
TGTTCC	1														1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
CG/CG	-	-	-	2											2
ACC/GGT	-	-	2											1	3
CCG/CGG	-	-	4												4
AGCC/CTGG	-	1													1
AAAAG/CTTTT	1														1
AAGGG/CCCTT	1														1
AGGCC/CCTGG	1														1
AGGCG/CCTCG	1														1
CCGCG/CGCGG	8														8
AACAGG/CCTGTT	1														1
AACGCC/CGTTGG				1											1
AAGGCC/CCTTGG	1														1
ACAGCC/CTGTGG	1			1											2
ACAGCG/CGCTGT	1														1
ACCCTG/AGGGTC	1														1
ACCGGC/CCGGTG	1														1
ACGATC/ATCGTG		1													1
ACGCCG/CGGCGT			1												1
ACGGCG/CCGTCG	1														1
AGCATC/ATGCTG	1														1
AGCCCG/CGGGCT		1			1										2
AGCGCC/CGCTGG	1	1													2
AGGCCC/CCTGGG	1														1
AGGCCG/CCTCGG	1														1
AGGCGC/CCTGCG	2														2
AGGGCC/CCCTGG	1														1
AGGGCG/CCCTCG	1														1
ATGGCC/ATGGCC	1														1
CCGGCG/CCGGCG	1														1
