Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-22/megassr/results/hub_GCA_041983775.1/fasta/hub_GCA_041983775.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              2
Total size of examined sequences (bp):           6570451
Total number of identified SSRs:                 52
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	9
5	10
6	31

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
CG	-	-	-	1										1
GC	-	-	-	1										1
CAC	-	-	1					1						2
CGC	-	-	1											1
CGG	-	-	3											3
GCG	-	-	2											2
GTG	-	-	1											1
CGCCG	3													3
CGCGC	1													1
GCCGC	2													2
GCCGT	1													1
GCGCG	1													1
GGCGA	1													1
GGCGC	1													1
AAGGCC	1													1
ACAGCG	1													1
AGCGCC	1													1
ATCACG		1												1
ATGGCC	1													1
CAACGC							1							1
CAGGAA	1													1
CAGGCG		1												1
CCAGGG	1													1
CCGAGC				1										1
CCGAGG	1													1
CCTGGC	2													2
CCTGGG	1													1
CGCCCT	1													1
CGCCGA		1												1
CGCTGG	1													1
CGGCGC	1													1
CGTGTT				1										1
GAGCCA	1													1
GCACCA		1												1
GCAGGG	1													1
GCCCAG	1													1
GCCTGC	2													2
GGCGCT	1													1
GGCTCG													1	1
GTACCA	1													1
GTCAGG	1													1
TAGCGC	1													1
TGGCTG											1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
CG/CG	-	-	-	2										2
ACC/GGT	-	-	2					1						3
CCG/CGG	-	-	6											6
ACGGC/CCGTG	1													1
AGGCG/CCTCG	1													1
CCGCG/CGCGG	8													8
AACACG/CGTGTT				1										1
AACAGG/CCTGTT	1													1
AACGCC/CGTTGG							1							1
AAGGCC/CCTTGG	1													1
ACAGCC/CTGTGG											1			1
ACAGCG/CGCTGT	1													1
ACCAGC/CTGGTG		1												1
ACCAGT/ACTGGT	1													1
ACCCTG/AGGGTC	1													1
ACGATC/ATCGTG		1												1
ACGCCG/CGGCGT		1												1
AGAGCC/CTCTGG	1													1
AGCCCG/CGGGCT				1									1	2
AGCGCC/CGCTGG	3													3
AGCGCT/AGCGCT	1													1
AGGCCC/CCTGGG	2													2
AGGCCG/CCTCGG	1													1
AGGCGC/CCTGCG	2	1												3
AGGGCC/CCCTGG	3													3
AGGGCG/CCCTCG	1													1
AGGGGC/CCCCTG	1													1
ATGGCC/ATGGCC	1													1
CCGGCG/CCGGCG	1													1
