Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-21/megassr/results/hub_GCA_041983765.1/fasta/hub_GCA_041983765.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              2
Total size of examined sequences (bp):           6483109
Total number of identified SSRs:                 54
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	13
5	13
6	25

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
CG	-	-	-	1										1
GC	-	-	-	1	1									2
CAC	-	-	1				1							2
CGC	-	-	3											3
CGG	-	-	3											3
GCG	-	-	4											4
GTG	-	-	1											1
CCACC	1													1
CGCCG	3													3
CGCGC	1													1
CGGCG	1													1
GCCGC	1													1
GCCTG		1												1
GCGCG	1													1
GGAAG	1													1
GGCGA	1													1
GGCGC	1													1
TCTGC			1											1
AAGGCC	1													1
ACAGCG	1													1
AGCGCC	1													1
ATGGCC	1													1
CAACGC													1	1
CAGGAA	1													1
CAGGCG	1													1
CCAGGG	1													1
CCGAGC				1										1
CCGAGG	1													1
CCGTGA				1										1
CCTGGG	1													1
CGCCCT	1													1
CGCCGA	1													1
CGCTGG	1													1
CGGCGC	1													1
CGTGTT	1													1
GCAGGG	1													1
GGCGCT	1													1
GGCTCG								1						1
GGTGCT	1													1
GTCAGG	1													1
TAGCGC	1													1
TCCCTG								1						1
TGGCTG					1									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
CG/CG	-	-	-	2	1									3
ACC/GGT	-	-	2				1							3
CCG/CGG	-	-	10											10
AAGGG/CCCTT	1													1
ACCCC/GGGGT	1													1
AGAGC/CTCTG			1											1
AGGCC/CCTGG		1												1
AGGCG/CCTCG	1													1
CCGCG/CGCGG	8													8
AACACG/CGTGTT	1													1
AACAGG/CCTGTT	1													1
AACGCC/CGTTGG													1	1
AAGGCC/CCTTGG	1													1
ACAGCC/CTGTGG					1									1
ACAGCG/CGCTGT	1													1
ACAGGG/CCCTGT								1						1
ACCAGC/CTGGTG	1													1
ACCCTG/AGGGTC	1													1
ACCGTG/ACGGTC				1										1
ACGCCG/CGGCGT	1													1
AGCCCG/CGGGCT				1				1						2
AGCGCC/CGCTGG	3													3
AGCGCT/AGCGCT	1													1
AGGCCC/CCTGGG	1													1
AGGCCG/CCTCGG	1													1
AGGCGC/CCTGCG	1													1
AGGGCC/CCCTGG	1													1
AGGGCG/CCCTCG	1													1
AGGGGC/CCCCTG	1													1
ATGGCC/ATGGCC	1													1
CCGGCG/CCGGCG	1													1
