Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-29/megassr/results/hub_GCA_041983755.1/fasta/hub_GCA_041983755.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              3
Total size of examined sequences (bp):           7332217
Total number of identified SSRs:                 59
Number of SSR containing sequences:              3
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	9
4	1
5	12
6	34

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
CG	-	-	-	1									1
GC	-	-	-	2									2
CAC	-	-	1										1
CCG	-	-	1										1
CGC	-	-	2										2
GCC	-	-	1										1
GCG	-	-	1										1
GGC	-	-		1									1
GGT	-	-	1										1
GTG	-	-							1				1
CTAA	-			1									1
CCAGG	1												1
CGATG	1												1
CGCCG	1												1
CGCGC	1												1
CGGCG	1												1
CTCGC	1												1
CTTCC	1												1
GCGCC	1												1
GCGGC	4												4
AACCCC	1												1
AAGGCC	1												1
ACAGCC										1			1
AGGGCG	1												1
CCATGC	1												1
CCGAGC									1				1
CCTCGG	1												1
CCTGAC	1												1
CGCCAG	1												1
CGCTGT	1												1
CGGCCT	1												1
CGGGAG	1												1
CGGGCT					1								1
CGTCGG		1											1
CGTGAT					1								1
CTCGCC		1											1
GCAGGC	2												2
GCCCTG	1												1
GCGCCG		1											1
GCGCCT	1												1
GGCCAG	1												1
GGCCAT	1												1
GGCCCA	1												1
GGCGCT	2	1											3
GGCTGT	1												1
GTCACG			1										1
GTTGGC												1	1
TAGCTT			1										1
TCCCTG			1										1
TCGTGG		1											1
TGTTCC	1												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
CG/CG	-	-	-	3									3
ACC/GGT	-	-	2						1				3
CCG/CGG	-	-	5	1									6
AACT/AGTT	-			1									1
AAGGG/CCCTT	1												1
AGGCC/CCTGG	1												1
AGGCG/CCTCG	1												1
ATCGC/ATGCG	1												1
CCGCG/CGCGG	8												8
AAAGCT/AGCTTT			1										1
AACAGG/CCTGTT	1												1
AACCCC/GGGGTT	1												1
AACGCC/CGTTGG												1	1
AAGGCC/CCTTGG	1												1
ACAGCC/CTGTGG	1									1			2
ACAGCG/CGCTGT	1												1
ACAGGG/CCCTGT			1										1
ACCACG/CGTGGT		1											1
ACCCTG/AGGGTC	1												1
ACCGTG/ACGGTC			1										1
ACGATC/ATCGTG					1								1
ACGCCG/CGGCGT		1											1
AGCCCG/CGGGCT					1				1				2
AGCGCC/CGCTGG	3	1											4
AGCGGG/CCCGCT	1												1
AGGCCC/CCTGGG	1												1
AGGCCG/CCTCGG	2												2
AGGCGC/CCTGCG	3												3
AGGGCC/CCCTGG	2												2
AGGGCG/CCCTCG	1	1											2
ATGCCC/ATGGGC	1												1
ATGGCC/ATGGCC	1												1
CCGGCG/CCGGCG		1											1
