Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-19/megassr/results/hub_GCA_041983585.1/fasta/hub_GCA_041983585.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              3
Total size of examined sequences (bp):           6691624
Total number of identified SSRs:                 54
Number of SSR containing sequences:              3
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	10
5	15
6	27

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
CG	-	-	-	1										1
GC	-	-	-	1										1
CAC	-	-	1			1								2
CGC	-	-	2											2
CGG	-	-	3											3
GCG	-	-	2											2
GTG	-	-	1											1
CGCCG	3													3
CGCGC	1													1
CGGCG	1													1
CTTCC		1												1
GCCGC	1													1
GCGCG	1													1
GGAAG	1	3												4
GGCGA	1													1
GGCGC	1													1
GGGAA	1													1
AAGGCC	1													1
ACAGCG	1													1
AGCGCC		1												1
ATCACG				1										1
ATGGCC	1													1
CAAACT		1												1
CAACGC											1			1
CAGGAA	1													1
CCAGCA		1												1
CCAGGG	1													1
CCGAGC				1										1
CCGAGG	1													1
CCGTGA		1												1
CCTGGG	1													1
CGCTGG	1													1
CGGCGC	1													1
GCCTGC	2													2
GCTCCC	1													1
GGCGCG		1												1
GGCGCT	1													1
GGCGGG	1													1
GGCTCG													1	1
GTCAGG	1													1
GTCGGC	1													1
TCCCTG					1									1
TGGCTG							1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
CG/CG	-	-	-	2										2
ACC/GGT	-	-	2			1								3
CCG/CGG	-	-	7											7
AAGGG/CCCTT	2	4												6
AGGCG/CCTCG	1													1
CCGCG/CGCGG	8													8
AAACTC/AGTTTG		1												1
AACAGG/CCTGTT	1													1
AACGCC/CGTTGG											1			1
AAGGCC/CCTTGG	1													1
ACAGCC/CTGTGG							1							1
ACAGCG/CGCTGT	1													1
ACAGGG/CCCTGT					1									1
ACCAGC/CTGGTG		1												1
ACCCTG/AGGGTC	1													1
ACCGTG/ACGGTC		1												1
ACGATC/ATCGTG				1										1
ACGCCG/CGGCGT	1													1
AGCCCG/CGGGCT				1									1	2
AGCGCC/CGCTGG	2	1												3
AGCGGG/CCCGCT	1													1
AGGCCC/CCTGGG	1													1
AGGCCG/CCTCGG	1													1
AGGCGC/CCTGCG	2													2
AGGGCC/CCCTGG	1													1
ATGGCC/ATGGCC	1													1
CCCCCG/CGGGGG	1													1
CCCGCG/CGCGGG		1												1
CCGGCG/CCGGCG	1													1
