Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-4/megassr/results/hub_GCA_041024805.1/fasta/hub_GCA_041024805.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              3
Total size of examined sequences (bp):           4732853
Total number of identified SSRs:                 17
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	3
4	1
5	6
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	total
TA	-	-	-	1																	1
CTG	-	-	1																		1
GGT	-	-	1																		1
TGC	-	-	1																		1
AACT	-	1																			1
AAAAT	2																				2
AAATG	1																				1
ATAGA	1																				1
CTTTA	1																				1
TCAAA	1																				1
AGTTTG			1																		1
ATCGAT	1																				1
CAATAT	1																				1
GCAGAA	1																				1
TGGCTC																				1	1
TTCTGC	1																				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	total
AT/AT	-	-	-	1																	1
ACC/GGT	-	-	1																		1
AGC/CTG	-	-	2																		2
AACT/AGTT	-	1																			1
AAAAT/ATTTT	2																				2
AAAGT/ACTTT	1																				1
AAATC/ATTTG	1																				1
AAATG/ATTTC	1																				1
AATAG/ATTCT	1																				1
AAACTC/AGTTTG			1																		1
AAGCAG/CTGCTT	2																				2
AATATC/ATATTG	1																				1
AGAGCC/CTCTGG																				1	1
ATATCG/ATATCG	1																				1
