Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-35/megassr/results/hub_GCA_041024285.1/fasta/hub_GCA_041024285.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              17
Total size of examined sequences (bp):           3638292
Total number of identified SSRs:                 14
Number of SSR containing sequences:              8
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	2
4	1
5	1
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AC	-	-	-	1	1
ACC	-	-	1		1
TAT	-	-	1		1
TTTA	-	1			1
AACCC	1				1
ACCAGC			1		1
ATAAAA	1				1
ATATGA	1				1
GAAAGA	1				1
GATACA	1				1
TGGAGC				1	1
TTTATT	1				1
TTTTAA				1	1
TTTTAT	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AC/GT	-	-	-	1	1
AAT/ATT	-	-	1		1
ACC/GGT	-	-	1		1
AAAT/ATTT	-	1			1
AACCC/GGGTT	1				1
AAAAAT/ATTTTT	3				3
AAAATT/AATTTT				1	1
AAAGAG/CTCTTT	1				1
AATATG/ATATTC	1				1
ACAGAT/ATCTGT	1				1
ACCAGC/CTGGTG			1		1
AGCTCC/AGCTGG				1	1
