Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-25/megassr/results/hub_GCA_041024175.1/fasta/hub_GCA_041024175.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              19
Total size of examined sequences (bp):           4764325
Total number of identified SSRs:                 21
Number of SSR containing sequences:              4
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	11
5	5
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CA	-	-	-	1	1
CG	-	-	-	1	1
ACG	-	-	1		1
CCA	-	-	1		1
CCG	-	-	3		3
CGC	-	-		1	1
CTG	-	-	1		1
GCC	-	-	2		2
GCT	-	-	1		1
GTG	-	-	1		1
AAAAT	1				1
CGCGC	1				1
GACGT	1				1
GCGTG	1				1
GGCGC	1				1
CGCCAG	1				1
CTGGCG	1				1
GAAGTC	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AC/GT	-	-	-	1	1
CG/CG	-	-	-	1	1
ACC/GGT	-	-	2		2
ACG/CGT	-	-	1		1
AGC/CTG	-	-	2		2
CCG/CGG	-	-	5	1	6
AAAAT/ATTTT	1				1
ACGCC/CGTGG	1				1
ACGTC/ACGTG	1				1
CCGCG/CGCGG	2				2
AAGTCG/ACTTCG	1				1
AGCGCC/CGCTGG	2				2
