Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-7/megassr/results/hub_GCA_041022405.1/fasta/hub_GCA_041022405.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              52
Total size of examined sequences (bp):           4633162
Total number of identified SSRs:                 19
Number of SSR containing sequences:              5
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	9
5	4
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
AC	-	-	-				1	1
CG	-	-	-	2				2
AGC	-	-	1					1
CGC	-	-	1					1
CGG	-	-	1					1
CGT	-	-	1					1
CTG	-	-	1					1
GCC	-	-	1					1
GCG	-	-	1					1
GGC	-	-	1					1
TGG	-	-	1					1
ACGTC	1							1
GCGCG	1							1
GGCGC	1							1
TTGTT	1							1
CGACTT	1							1
CTGGCG	1							1
GCCAGC	1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
AC/GT	-	-	-				1	1
CG/CG	-	-	-	2				2
ACC/GGT	-	-	1					1
ACG/CGT	-	-	1					1
AGC/CTG	-	-	2					2
CCG/CGG	-	-	5					5
AAAAC/GTTTT	1							1
ACGTC/ACGTG	1							1
CCGCG/CGCGG	2							2
AAGTCG/ACTTCG	1							1
AGCGCC/CGCTGG	2							2
