Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_040114635.1/fasta/hub_GCA_040114635.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              126
Total size of examined sequences (bp):           29195075
Total number of identified SSRs:                 5585
Number of SSR containing sequences:              112
Number of sequences containing more than 1 SSR:  91
Number of SSRs present in compound formation:    428


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1453
2	1711
3	493
4	408
5	921
6	599

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	146	147	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	230	188	123	68	52	37	16	7	7	1	1	1		1	1			1																																																																																																															734
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	249	173	107	76	36	27	15	6	10	9	8			1		2																																																																																																																	719
AC	-	-	-	22	6	5	2		1	1	1	1																																																																																																																																						39
AG	-	-	-	7		1	1																																																																																																																																											9
AT	-	-	-	481	134	77	49	39	24	15	15	7	11	5	4	6	5	4	2	1	2	2																																																																																																																												883
CA	-	-	-	33	14	7	1		2	1																																																																																																																																								58
CG	-	-	-	3																																																																																																																																														3
CT	-	-	-	8	2			1		1	2																																																																																																																																							14
GA	-	-	-	6	2	2						1																																																																																																																																						11
GC	-	-	-	8																																																																																																																																														8
GT	-	-	-	22	8	4	2	2	1																																																																																																																																									39
TA	-	-	-	285	95	59	35	16	18	15	4	13	3	7	3	4	3	4	2	1		2	1	1			1																																																																																																																							572
TC	-	-	-	7	1	2					1																																																																																																																																							11
TG	-	-	-	42	11	6	1	2	1					1																																																																																																																																				64
AAC	-	-	1	1				1		1																																																																																																																																								4
AAG	-	-	10	3	1	1																																																																																																																																												15
AAT	-	-	10	5		2						1					1																																																																																																																																	19
ACA	-	-				1																1																																																																																																																												2
ACC	-	-	3	1	1																																																																																																																																													5
AGA	-	-	6	4		1	1		2						1																																																																																																																																			15
AGC	-	-	6	1	1																																																																																																																																													8
AGG	-	-	4								1																																																																																																																																							5
AGT	-	-	2																																																																																																																																														1	3
ATA	-	-	17	7	2																																																																																																																																													26
ATC	-	-	2																																																																																																																																															2
ATG	-	-	4			1		1																																																																																																																																										6
ATT	-	-	9	2	2																																																																																																																																													13
CAA	-	-		2		1										1																																																																																																																																		4
CAC	-	-	4																																																																																																																																															4
CAG	-	-	10	3																																																																																																																																														13
CAT	-	-	7	3																																																																																																																																														10
CCA	-	-	2																																																																																																																																															2
CCG	-	-	2																																																																																																																																															2
CCT	-	-	2		2		2	1																																																																																																																																										7
CGA	-	-	1																																																																																																																																															1
CGG	-	-		1																																																																																																																																														1
CGT	-	-	1	1																																																																																																																																														2
CTA	-	-	2																			1																																																																																																																												3
CTC	-	-	11	2		1																																																																																																																																												14
CTG	-	-	4	2	1																																																																																																																																													7
CTT	-	-	13	5		2		2	1																																																																																																																																									23
GAA	-	-	15	4	2	1	1	3								1																																																																																																																																		27
GAC	-	-	5																																																																																																																																															5
GAG	-	-	17	4	3	2	2				1																																																																																																																																							29
GAT	-	-	12	3																																																																																																																																														15
GCA	-	-	2	3				1																																																																																																																																										6
GCG	-	-	2																																																																																																																																															2
GCT	-	-	7		2																																																																																																																																													9
GGA	-	-	5	1						1																																																																																																																																								7
GGC	-	-		1																																																																																																																																														1
GGT	-	-	1		1																																																																																																																																													2
GTA	-	-			2																																																																																																																																													2
GTC	-	-	1																																																																																																																																															1
GTG	-	-	4																																																																																																																																															4
GTT	-	-	1		1		1		1																																																																																																																																									4
TAA	-	-	8																																																																																																																																															8
TAC	-	-	2																																																																																																																																															2
TAT	-	-	9	4	2																																																																																																																																													15
TCA	-	-	3	2	1	1			1																																																																																																																																									8
TCC	-	-	18	9	4	2							1																																																																																																																																					34
TCG	-	-		1																																																																																																																																														1
TCT	-	-	9	3	2	2		1		1																																																																																																																																								18
TGA	-	-	4		2																																																																																																																																													6
TGC	-	-	7		1																																																																																																																																													8
TGG	-	-	3	1																																																																																																																																														4
TGT	-	-	2	1				1																																																																																																																																										4
TTA	-	-	9	2	1	1					1																				1																																											1						1																																																																		17
TTC	-	-	17	7	3			1		1	1													1																																																																																																																										31
TTG	-	-	6								1																																																																																																																																							7
AAAC	-	5	2	1				1				1																																																																																																																																						10
AAAG	-	2				1	1																																																																																																																																											4
AAAT	-	29	13	3	1	2																																																																																																																																												48
AACA	-	1																																																																																																																																																1
AACG	-	5		1	1			1																																																																																																																																										8
AAGA	-	2																																																																																																																																																2
AAGC	-	1				1																																																																																																																																												2
AAGG	-	2																																																																																																																																																2
AATA	-	13	4	2	1																																																							1																																																																																						21
AATG	-		1																																																																																																																																															1
AATT	-	2	1																																																																																																																																															3
ACAA	-	2																																																																																																																																																2
ACAT	-	1		1																																																																																																																																														2
ACGA	-	1			2																																																																																																																																													3
ACGT	-	1																																																																																																																																																1
AGAA	-	1																																																																																																																																																1
AGCT	-	3																																																																																																																																																3
AGGC	-			1																																																																																																																																														1
ATAA	-	2	2	1	1																																																																																																																																													6
ATAC	-	3	3	1	1																																		1																			1																																																																																				1				11
ATCC	-	1																																																																																																																																																1
ATGC	-		1																																																																																																																																															1
ATGT	-	4	1																																																																																																		1																																													6
ATTA	-	3	1		1																																																																																																																																													5
ATTT	-	17	2	2	1																																																																																																																																													22
CAAA	-	1		1																																																																																																																																														2
CAAG	-	1	1																																																																																																																																															2
CATA	-	2	2	2	1																																																																																																																																													7
CATC	-			1																																																																																																																																														1
CATG	-	1																																																																																																																																																1
CCTA	-	1																																																																																																																																																1
CGAA	-	2																																																																																																																																																2
CGGA	-	1																																																																																																																																																1
CGGT	-						1																																																																																																																																											1
CGTA	-	2																																																																																																																																																2
CTGT	-		1																																																																																																																																															1
CTTA	-	1																																																																																																																																																1
CTTC	-	4	2																																																																																																																																															6
CTTG	-		1																																																																																																																																															1
CTTT	-	3																																																																																																																																																3
GAAA	-	3																																																																																																																																																3
GAAC	-	2	2																																																																																																																																															4
GAAG	-			1																																																																																																																																														1
GAAT	-																			1																																																																																																																														1
GACT	-	1																																																																																																																																																1
GATA	-	1																																																																																																																																																1
GCAC	-	2																																																																																																																																																2
GCGA	-		1																																																																																																																																															1
GCGT	-	1																																																																																																																																																1
GCTA	-	3	2																																																																																																																																															5
GGAC	-	1																																																																																																																																																1
GGCA	-	1																																																																																																																																																1
GGTC	-		1																																																																																																																																															1
GGTT	-	1																																																																																																																																																1
GTAC	-	1	1																																																																																																																																															2
GTAT	-	5	3						1							1																																	1																																																															1																																		12
GTTC	-			3																																																																																																																																														3
GTTT	-	4	2																																																																																																																																															6
TAAA	-	8	2																																																																																																																																															10
TAAT	-	5		1																																																																																																																																														6
TACA	-	2	1	1	1			1										1																																																																																																																																7
TACC	-	1																																																																																																																																																1
TACG	-	4	2																																																																																																																																															6
TAGC	-	7	2	1																																																																																																																																														10
TATC	-	1																																																																																																																																																1
TATG	-	3					1		2	1																																													1																																																																																											8
TATT	-	12	3			1	1																																																																																																																																											17
TCAT	-	1																																																																																																																																																1
TCCA	-				1																																																																																																																																													1
TCGA	-	1																																																																																																																																																1
TCGT	-		2	1																																																																																																																																														3
TCTG	-																																																																																					1																																																												1
TGAA	-	1																																																																																																																																																1
TGAG	-			1	1																																																																																																																																													2
TGAT	-	1	1																																																																																																																																															2
TGTA	-	2	1	2	1																																								1				1																																																																																																	8
TGTT	-	3	1		2																																																																																																																																													6
TTAA	-	1	1																																																																																																																																															2
TTAT	-	13	1	2																																																																																																																																														16
TTCA	-					1																																																																																																																																												1
TTCG	-	1	2																																																																																																																																															3
TTCT	-			3		1																				1																																																																																																																								5
TTGA	-	1			1																																																																																																																																													2
TTGC	-	2																																																																																																																																																2
TTGT	-		1																																																																																																																																															1
TTTA	-	20	6	1	1										1																																																																																																																																			29
TTTC	-	3	2																																																																																																																																															5
TTTG	-							1			1		1								1																																																																																																																													4
AAAAC	6	1																																																																																																																																																7
AAAAG	16	3	2	1																																																																																																																																														22
AAAAT	65	13	10	1	1							1																																																																																																																																						91
AAACA	1	2		1																																																																																																																																														4
AAACG	1																																																																																																																																																	1
AAAGA	6																																																																																																																																																	6
AAAGC	3	5																																																																																																																																																8
AAAGG	4				1																																																																																																																																													5
AAATA	18	6	1	2																																																																																																																																														27
AAATC				1																																																																																																																																														1
AAATG	1	1																																																																																																																																																2
AAATT	5				1																																																																																																																																													6
AACAA	2																																																																																																																																																	2
AACAG	1																																																																																																																																																	1
AACGG	1																																																																																																																																																	1
AAGAA	3																																																																																																																																																	3
AAGAT				1																																																																																																																																														1
AAGCA	2	1	1																																																																																																																																															4
AAGCG	1																																																																																																																																																	1
AATAA	25	2	1			1																																																																																																																																												29
AATAC	2	1																																																																																																																																																3
AATAT	8	1																																																																																																																																																9
AATCG		1																																																																																																																																																1
AATGC	2																																																																																																																																																	2
AATTA	1																																																																																																																																																	1
AATTG		1																																																																																																																																																1
AATTT	4																																																																																																																																																	4
ACAAA	2	1																																																																																																																																																3
ACAAC	2																																																																																																																																																	2
ACAAT		2																																																																																																																																																2
ACATA		1																																																																																																																																																1
ACCTG		1																																																																																																																																																1
ACGAA	1																																																																																																																																																	1
ACTGA	1																																																																																																																																																	1
ACTGT	1																																																																																																																																																	1
AGAAA	4																																																																																																																																																	4
AGAAC	1																																																																																																																																																	1
AGAAG	2																																																																																																																																																	2
AGAGC	1																																																																																																																																																	1
AGAGG		1																																																																																																																																																1
AGCAA	2	1																																																																																																																																																3
AGCAG	1																																																																																																																																																	1
AGCAT	1	1																																																																																																																																																2
AGCGC	1																																																																																																																																																	1
AGCGT	1																																																																																																																																																	1
AGGAA	1																																																																																																																																																	1
AGGAG	1																																																																																																																																																	1
AGGGG		1																																																																																																																																																1
AGGTC	1																																																																																																																																																	1
AGTAA			1																																																																																																																																															1
AGTAT		1																																																																																																																																																1
AGTGA	1																																																																																																																																																	1
ATAAA	13				1																						1																																																																																																																							15
ATAAT	7	2																																																																																																																																																9
ATATA	4																																																																																																																																																	4
ATATC	1																																																																																																																																																	1
ATATT	4																																																																																																																																																	4
ATCCC	1																																																																																																																																																	1
ATCTC	1																																																																																																																																																	1
ATCTG	1																																																																																																																																																	1
ATGAA	1																																																																																																																																																	1
ATGCT	1																																																																																																																																																	1
ATTAA	1	1																																																																																																																																																2
ATTAT	5																																																																																																																																																	5
ATTGG		1																																																																																																																																																1
ATTGT	3	1																																																																																																																																																4
ATTTA	2																																																																																																																																																	2
ATTTC	2																																																																																																																																																	2
ATTTT	28	4	1																																																																																																																																															33
CAAAA	3					1																																																																																																																																												4
CAAAC	1																																																																																																																																																	1
CAAAG	1	1																																																																																																																																																2
CAACG				1																																																																																																																																														1
CAATG		1																																																																																																																																																1
CACAG	1																																																																																																																																																	1
CACGC	1																																																																																																																																																	1
CACGT	1																																																																																																																																																	1
CACTG	1																																																																																																																																																	1
CAGAC		1																																																																																																																																																1
CAGCA	1																																																																																																																																																	1
CAGCG	2																																																																																																																																																	2
CAGTA	1																																																																																																																																																	1
CAGTT			1																																																																																																																																															1
CATAA	2	2																																																																																																																																																4
CATAC	1																																																																																																																																																	1
CATAT	2																																																																																																																																																	2
CATCA	2																																																																																																																																																	2
CATGT	1																																																																																																																																																	1
CATTG	1																																																																																																																																																	1
CCAAC	1																																																																																																																																																	1
CCACG	1																																																																																																																																																	1
CCATT	1																																																																																																																																																	1
CCCCG	1																																																																																																																																																	1
CCCCT	1																																																																																																																																																	1
CCTGA		1																																																																																																																																																1
CGAAA	1						1																																																																																																																																											2
CGAAC	1																																																																																																																																																	1
CGAAG	1	1																																																																																																																																																2
CGATT		1																																																																																																																																																1
CGCAG	1																																																																																																																																																	1
CGCAT	1																																																																																																																																																	1
CGCCC	1																																																																																																																																																	1
CGCGA	1																																																																																																																																																	1
CGCTC	1																																																																																																																																																	1
CGCTG	2																																																																																																																																																	2
CGCTT	4																																																																																																																																																	4
CGTAG	1																																																																																																																																																	1
CGTTA	1		1																																																																																																																																															2
CGTTC	1																																																																																																																																																	1
CGTTG	1	1																																																																																																																																																2
CTAAG	1																																																																																																																																																	1
CTAGG	1																																																																																																																																																	1
CTATC	1																																																																																																																																																	1
CTCAC	1																																																																																																																																																	1
CTCCA	1																																																																																																																																																	1
CTCCT	1																																																																																																																																																	1
CTCGA	1																																																																																																																																																	1
CTGCT	1																																																																																																																																																	1
CTGTG	2																																																																																																																																																	2
CTTCC				1																																																																																																																																														1
CTTCG	1																																																																																																																																																	1
CTTGG	1																																																																																																																																																	1
CTTTC	1																																																																																																																																																	1
CTTTG		2																																																																																																																																																2
CTTTT	3			2																																																																																																																																														5
GAAAA	11	4		1																																																																																																																																														16
GAAAT	1																																																																																																																																																	1
GAACA	3																																																																																																																																																	3
GAAGA	2																																																																																																																																																	2
GAAGC	5																																																																																																																																																	5
GAAGG	1																																																																																																																																																	1
GAAGT	2		1																																																																																																																																															3
GAGAG	1																																																																																																																																																	1
GATAG		1																																																																																																																																																1
GATGC		1																																																																																																																																																1
GATGT	2	1																																																																																																																																																3
GATTT	2																																																																																																																																																	2
GCAAC	1	1																																																																																																																																																2
GCAAG	1																																																																																																																																																	1
GCAAT	2																																																																																																																																																	2
GCACA	1	1																																																																																																																																																2
GCAGC	1																																																																																																																																																	1
GCATC	1																																																																																																																																																	1
GCCAT		1																																																																																																																																																1
GCGAA	1																																																																																																																																																	1
GCGCC	1																																																																																																																																																	1
GCTAT				1																																																																																																																																														1
GCTCC	1																																																																																																																																																	1
GCTCT	1																																																																																																																																																	1
GCTGC	1																																																																																																																																																	1
GCTGT	1																																																																																																																																																	1
GCTTA		1																																																																																																																																																1
GCTTC	2																																																																																																																																																	2
GCTTT	2																																																																																																																																																	2
GGAGA	2																																																																																																																																																	2
GGCGC	1																																																																																																																																																	1
GGCTT			1																																																																																																																																															1
GGGAG	1																																																																																																																																																	1
GGTGA	1																																																																																																																																																	1
GGTGC	1																																																																																																																																																	1
GTACA	1																																																																																																																																																	1
GTAGC	1																																																																																																																																																	1
GTATA				1																																																																																																																																														1
GTCAA	1																																																																																																																																																	1
GTCTC	1																																																																																																																																																	1
GTGAA	2																																																																																																																																																	2
GTGAT	1																																																																																																																																																	1
GTGCT	1	1																																																																																																																																																2
GTGGC	1																																																																																																																																																	1
GTTAT	1		1																																																																																																																																															2
GTTTT	5																																																																																																																																																	5
TAAAA	12	4	1	1																																																																																																																																														18
TAAAT	2																																																																																																																																																	2
TAAGC	1	1																																																																																																																																																2
TAATA	7																																																																																																																																																	7
TAATG	3																																																																																																																																																	3
TAATT		1																																																																																																																																																1
TACAA		1																																																																																																																																																1
TACCG	1																																																																																																																																																	1
TACCT	1																																																																																																																																																	1
TAGCG	1																																																																																																																																																	1
TAGCT	1																																																																																																																																																	1
TATAA	11	1																																																																																																																																																12
TATAC	1																																																																																																																																																	1
TATAG	1																																																																																																																																																	1
TATAT	8		1																																																																																																																																															9
TATCA	1																																																																																																																																																	1
TATGC	3																																																																																																																																																	3
TATGT	1																																																																																																																																																	1
TATTA	6																																																																																																																																																	6
TATTT	14	4	2																																																																																																																																															20
TCACA	1																																																																																																																																																	1
TCACC	3																																																																																																																																																	3
TCACT	1																																																																																																																																																	1
TCATA	1																																																																																																																																																	1
TCCAA	1																																																																																																																																																	1
TCCAC	1																																																																																																																																																	1
TCCTT	1																																																																																																																																																	1
TCTCA	2																																																																																																																																																	2
TCTGC	1																																																																																																																																																	1
TCTGT	1																																																																																																																																																	1
TCTTA		1																																																																																																																																																1
TCTTC	2																																																																																																																																																	2
TCTTT	1						1																																																																																																																																											2
TGAAA	2	1																																																																																																																																																3
TGAAG	1																																																																																																																																																	1
TGAAT	1																																																																																																																																																	1
TGATA	2																																																																																																																																																	2
TGATT	1																																																																																																																																																	1
TGCAA	1																																																																																																																																																	1
TGCCG	1																																																																																																																																																	1
TGCCT	1																																																																																																																																																	1
TGCGA	3																																																																																																																																																	3
TGCGT		1																																																																																																																																																1
TGCTA	2	2																																																																																																																																																4
TGCTG	2																																																																																																																																																	2
TGCTT	2	1																																																																																																																																																3
TGGAC	1																																																																																																																																																	1
TGGAG	1																																																																																																																																																	1
TGGCG	2																																																																																																																																																	2
TGTGA	1																																																																																																																																																	1
TGTGC	3			1																																																																																																																																														4
TGTTA			1																																																																																																																																															1
TGTTG	1																																																																																																																																																	1
TGTTT	5																																																																																																																																																	5
TTAAA	3																																																																																																																																																	3
TTAAT	1			1																																																																																																																																														2
TTACA	1																																																																																																																																																	1
TTAGC	1																																																																																																																																																	1
TTAGT	1																																																																																																																																																	1
TTATA	9																																																																																																																																																	9
TTATT	33	5	3																																																																																																																																															41
TTCAA	1																																																																																																																																																	1
TTCCC			1																																																																																																																																															1
TTCCT	4																																																																																																																																																	4
TTCGC	1																																																																																																																																																	1
TTCGT			1																																																																																																																																															1
TTCTC	1	1																																																																																																																																																2
TTCTT	2		1					1																																																																																																																																										4
TTGCA	1																																																																																																																																																	1
TTGCG	1																																																																																																																																																	1
TTGGC	1																																																																																																																																																	1
TTGTG	1																																																																																																																																																	1
TTGTT	1																																																																																																																																																	1
TTTAA	5																																																																																																																																																	5
TTTAT	17	6	2	1	1			1																																																																																																																																										28
TTTCA	2																																																																																																																																																	2
TTTCC	3																																																																																																																																																	3
TTTCG	1	1	1		1																																																																																																																																													4
TTTCT	6	3	1																																																																																																																																															10
TTTGC	5	2																																																																																																																																																7
TTTGT	6	2																																																																																																																																																8
TTTTA	47	9	2	2	1						1																																																																																																																																							62
TTTTC	15	3	4					1																																																																																																																																										23
TTTTG	6	2	1	1																																																																																																																																														10
AAAAAC	5																																																																																																																																																	5
AAAAAG	14	3		1																																																																																																																																														18
AAAAAT	15	2	1																																																																																																																																															18
AAAACA	1																																																																																																																																																	1
AAAAGA	6	2																																																																																																																																																8
AAAAGC	3																																																																																																																																																	3
AAAAGG	1		1																																																																																																																																															2
AAAATA	4																																																																																																																																																	4
AAAATT	1																																																																																																																																																	1
AAACAG	1																																																																																																																																																	1
AAACGC		1					1																																																																																																																																											2
AAAGAA	4																																																																																																																																																	4
AAAGAG	1	1																																																																																																																																																2
AAAGAT		1																																																																																																																																																1
AAAGCG	1																																																																																																																																																	1
AAAGGA	1	1																																																																																																																																																2
AAAGGG	3																																																																																																																																																	3
AAAGTG			1																																																																																																																																															1
AAATAA	4																																																																																																																																																	4
AAATAG	1																																																																																																																																																	1
AAATAT	1																																																																																																																																																	1
AAATGA	1																																																																																																																																																	1
AACAAT	2																																																																																																																																																	2
AACAGC	1				1																																																																																																																																													2
AACCCT	2																																																																																																																																																	2
AACGAT			1																																																																																																																																															1
AACGCA		1																																																																																																																																																1
AAGAAA	7	1																																																																																																																																																8
AAGAGC	1																																																																																																																																																	1
AAGATA	1																																																																																																																																																	1
AAGCAG	1																																																																																																																																																	1
AAGCGA	1																																																																																																																																																	1
AAGGAG	1																																																																																																																																																	1
AAGGAT	1																																																																																																																																																	1
AATAAA	1																																																																																																																																																	1
AATAAC	2																																																																																																																																																	2
AATAGC			1																																																																																																																																															1
AATCGT	1																																																																																																																																																	1
AATGTT	1																																																																																																																																																	1
AATTAA	1																																																																																																																																																	1
AATTAT	1																																																																																																																																																	1
AATTGT	1																																																																																																																																																	1
AATTTC	1																																																																																																																																																	1
AATTTT	1																																																																																																																																																	1
ACAAAA	2	1																																																																																																																																																3
ACACGC	1																																																																																																																																																	1
ACATAC	2			1			1																																																																																																																																											4
ACATAT	2																																																																																																																																																	2
ACATGT	2																																																																																																																																																	2
ACATTT	1																																																																																																																																																	1
ACCAGA	2																																																																																																																																																	2
ACGATA	1																																																																																																																																																	1
ACGATC	1																																																																																																																																																	1
ACGGCA		1																																																																																																																																																1
ACGTAT		1																																																																																																																																																1
ACGTTT		1																																																																																																																																																1
ACTGCA	1																																																																																																																																																	1
ACTTTC	1																																																																																																																																																	1
AGAAAA	1	1																																																																																																																																																2
AGAACG								1																																																																																																																																										1
AGAAGC	1		1																																																																																																																																															2
AGAAGG	1																																																																																																																																																	1
AGAATG	1																																																																																																																																																	1
AGAGGA	1																																																																																																																																																	1
AGAGGC	1																																																																																																																																																	1
AGAGGG	1																																																																																																																																																	1
AGCAAC		1																																																																																																																																																1
AGCGGA	1																																																																																																																																																	1
AGCGGC	1		1																																																																																																																																															2
AGCGGG	1																																																																																																																																																	1
AGCGGT	1																																																																																																																																																	1
AGCGTT	1																																																																																																																																																	1
AGGAAA	1																																																																																																																																																	1
AGGAAG	1																																																																																																																																																	1
AGGAGA		1																																																																																																																																																1
AGGCGC	1																																																																																																																																																	1
AGTAAT	1																																																																																																																																																	1
AGTAGA	1																																																																																																																																																	1
AGTAGC	2																																																																																																																																																	2
AGTGGT	1																																																																																																																																																	1
ATAAAA	1																																																																																																																																																	1
ATAAAC	1																																																																																																																																																	1
ATAACA	1																																																																																																																																																	1
ATACAT	3																																																																																																																																																	3
ATATAC	3																																																																																																																																																	3
ATATGA	1																																																																																																																																																	1
ATATGC	1																																																																																																																																																	1
ATGAAA	1																																																																																																																																																	1
ATGCGC	1																																																																																																																																																	1
ATGCGT	1																																																																																																																																																	1
ATGCTC	1																																																																																																																																																	1
ATGGCA	1																																																																																																																																																	1
ATGGCG	2																																																																																																																																																	2
ATGTAA	1																																																																																																																																																	1
ATGTAT	4																																																																																																																																																	4
ATTAAT	2																																																																																																																																																	2
ATTAGC	1																																																																																																																																																	1
ATTATA	1																																																																																																																																																	1
ATTCGT	1																																																																																																																																																	1
ATTTTA	1																																																																																																																																																	1
CAAACA	1																																																																																																																																																	1
CAAATG	1																																																																																																																																																	1
CAACAG	1																																																																																																																																																	1
CAACGG	1																																																																																																																																																	1
CACATA	1																																																																																																																																																	1
CACTCA	1																																																																																																																																																	1
CACTTT	1																																																																																																																																																	1
CAGAAG	1																																																																																																																																																	1
CAGCTA	1																																																																																																																																																	1
CAGTAA	1																																																																																																																																																	1
CAGTTG	1																																																																																																																																																	1
CATACG	1																																																																																																																																																	1
CATATA	1						1																																																																																																																																											2
CATATC	1																																																																																																																																																	1
CATCAC	1																																																																																																																																																	1
CATCGT	1	1																																																																																																																																																2
CATCTT	1																																																																																																																																																	1
CATGTG	1		1																																																																																																																																															2
CATTAA	1																																																																																																																																																	1
CATTTG	1																																																																																																																																																	1
CCACTG	1																																																																																																																																																	1
CCATAT	1																																																																																																																																																	1
CCATCC	1																																																																																																																																																	1
CCATTA	1																																																																																																																																																	1
CCATTG	1																																																																																																																																																	1
CCCACT	1																																																																																																																																																	1
CCCGCA	1																																																																																																																																																	1
CCCTCT	1																																																																																																																																																	1
CCCTTT	1																																																																																																																																																	1
CCGCAA	1	1																																																																																																																																																2
CCGCAG	1																																																																																																																																																	1
CCGCCA	1																																																																																																																																																	1
CCGCTT	1																																																																																																																																																	1
CCTAAA	1																																																																																																																																																	1
CCTCGC	1																																																																																																																																																	1
CCTCTG		1																																																																																																																																																1
CCTCTT	1																																																																																																																																																	1
CCTTCA		1																																																																																																																																																1
CCTTCC	1																																																																																																																																																	1
CCTTTT		1																																																																																																																																																1
CGATGC	1																																																																																																																																																	1
CGCAAC	1																																																																																																																																																	1
CGCAGC	1																																																																																																																																																	1
CGCCAT	1																																																																																																																																																	1
CGCCCT		1																																																																																																																																																1
CGCTAA	1																																																																																																																																																	1
CGCTCT		1																																																																																																																																																1
CGCTGA	1																																																																																																																																																	1
CGCTGC	2																																																																																																																																																	2
CGCTTT	1																																																																																																																																																	1
CGGAAG	2																																																																																																																																																	2
CGGCAA	1																																																																																																																																																	1
CGGCTT	1																																																																																																																																																	1
CGGGTA	1																																																																																																																																																	1
CGTATA	1																																																																																																																																																	1
CGTCCC	1																																																																																																																																																	1
CGTTAA	1																																																																																																																																																	1
CGTTAC	1																																																																																																																																																	1
CGTTGA	1																																																																																																																																																	1
CTACAA	1	1																																																																																																																																																2
CTCCCA			1																																																																																																																																															1
CTCCCT	1																																																																																																																																																	1
CTCTAC	1																																																																																																																																																	1
CTCTTC	2																																																																																																																																																	2
CTCTTT	1																																																																																																																																																	1
CTGCAA	1																																																																																																																																																	1
CTGCGA	1																																																																																																																																																	1
CTGCGC	1																																																																																																																																																	1
CTGCGG	1																																																																																																																																																	1
CTGCTC	1																																																																																																																																																	1
CTGTTC	1																																																																																																																																																	1
CTGTTT	1																																																																																																																																																	1
CTTCAC	1																																																																																																																																																	1
CTTCCT	2																																																																																																																																																	2
CTTCGT	1																																																																																																																																																	1
CTTCTA	1																																																																																																																																																	1
CTTCTC	4		1																																																																																																																																															5
CTTGAC	1																																																																																																																																																	1
CTTTAC			1																																																																																																																																															1
CTTTCC	2																																																																																																																																																	2
CTTTTC	1																																																																																																																																																	1
CTTTTT	6			1				1																																																																																																																																										8
GAAAAA	2																																																																																																																																																	2
GAAAAC	1																																																																																																																																																	1
GAAAAG	1																																																																																																																																																	1
GAAAAT	2																																																																																																																																																	2
GAAAGA	1																																																																																																																																																	1
GAAAGC	1																																																																																																																																																	1
GAAATT	1																																																																																																																																																	1
GAAGAG	1																																																																																																																																																	1
GAAGCA	1																																																																																																																																																	1
GAAGCG	1																																																																																																																																																	1
GAAGGA	1																																																																																																																																																	1
GAAGTG			1																																																																																																																																															1
GAATGC		1																																																																																																																																																1
GACACG		1																																																																																																																																																1
GACAGG	1																																																																																																																																																	1
GACTCG	1																																																																																																																																																	1
GAGAAA	1																																																																																																																																																	1
GAGAAC				1																																																																																																																																														1
GAGAAT	1																																																																																																																																																	1
GAGAGG	1																																																																																																																																																	1
GAGCGG	1																																																																																																																																																	1
GAGGAA	3																																																																																																																																																	3
GAGGCG	1																																																																																																																																																	1
GATGAA	1																																																																																																																																																	1
GATGGC	1																																																																																																																																																	1
GATTGC	1																																																																																																																																																	1
GCAAAA					1																																																																																																																																													1
GCAAAT	1	1																																																																																																																																																2
GCAAGC	1																																																																																																																																																	1
GCAATC	2																																																																																																																																																	2
GCACAT	1																																																																																																																																																	1
GCAGAC	1																																																																																																																																																	1
GCAGAG		2																																																																																																																																																2
GCAGGG	1																																																																																																																																																	1
GCAGTT	1																																																																																																																																																	1
GCATAC					1																																																																																																																																													1
GCATAT	1																																																																																																																																																	1
GCATTA	1																																																																																																																																																	1
GCCACT		1																																																																																																																																																1
GCCGCT		1																																																																																																																																																1
GCCGTT	1																																																																																																																																																	1
GCCTAC	1																																																																																																																																																	1
GCCTCC	1																																																																																																																																																	1
GCCTGT		1																																																																																																																																																1
GCGAAG	2																																																																																																																																																	2
GCGACT	1																																																																																																																																																	1
GCGGTT	1																																																																																																																																																	1
GCGTAA	2																																																																																																																																																	2
GCGTGT	1																																																																																																																																																	1
GCGTTT		1																																																																																																																																																1
GCTACC	1																																																																																																																																																	1
GCTATT	1																																																																																																																																																	1
GCTCCT	1																																																																																																																																																	1
GCTGCC	1																																																																																																																																																	1
GCTGGA		1																																																																																																																																																1
GCTGTC	1																																																																																																																																																	1
GCTTCG	1			1																																																																																																																																														2
GCTTGA	1																																																																																																																																																	1
GGAAAA	4	1																																																																																																																																																5
GGAAGA		1																																																																																																																																																1
GGAAGC	2																																																																																																																																																	2
GGAGAA	2																																																																																																																																																	2
GGATAA		1																																																																																																																																																1
GGATAT	6																																																																																																																																																	6
GGCAAA	1																																																																																																																																																	1
GGCAGC	1																																																																																																																																																	1
GGCAGG	1																																																																																																																																																	1
GGCGGA	1																																																																																																																																																	1
GGCTAC	1																																																																																																																																																	1
GGGAGC	1																																																																																																																																																	1
GGGCGG	1																																																																																																																																																	1
GGTAAA	1																																																																																																																																																	1
GGTAGC	2	1																																																																																																																																																3
GGTAGT	1																																																																																																																																																	1
GGTGAG	2																																																																																																																																																	2
GGTTAA	1																																																																																																																																																	1
GGTTTA	3	1																																																																																																																																																4
GTAAAA	1																																																																																																																																																	1
GTACAC	2																																																																																																																																																	2
GTACAT		1																																																																																																																																																1
GTATAC	1																																																																																																																																																	1
GTCTTC	1																																																																																																																																																	1
GTGAAA					1																																																																																																																																													1
GTGAAG	1																																																																																																																																																	1
GTGGAA		1																																																																																																																																																1
GTGTTC				1																																																																																																																																														1
GTTCAC	1																																																																																																																																																	1
GTTCTG	3																																																																																																																																																	3
GTTGAA	1																																																																																																																																																	1
GTTGCA	1																																																																																																																																																	1
GTTGCT																		1																																																																																																																																1
GTTTAT	1																																																																																																																																																	1
GTTTTT		1																																																																																																																																																1
TAAAAA	2																																																																																																																																																	2
TAAAAT	2																																																																																																																																																	2
TAAATA		1																																																																																																																																																1
TAACAA	1																																																																																																																																																	1
TAACAG			1																																																																																																																																															1
TACATT	1																																																																																																																																																	1
TACGTT		1																																																																																																																																																1
TAGCGA	1																																																																																																																																																	1
TAGGGT	1																																																																																																																																																	1
TAGTGG	1																																																																																																																																																	1
TATAAT	1																																																																																																																																																	1
TATACA	3																																																																																																																																																	3
TATACG	1																																																																																																																																																	1
TATATG	2																																																																																																																																																	2
TATCTA	1																																																																																																																																																	1
TATCTT	1																																																																																																																																																	1
TATGTA	2																																																																																																																																																	2
TATTAA	3																																																																																																																																																	3
TATTGC	1																																																																																																																																																	1
TATTTA	1																																																																																																																																																	1
TATTTT	2																																																																																																																																																	2
TCAACA	1																																																																																																																																																	1
TCACCA	1																																																																																																																																																	1
TCACCT	1																																																																																																																																																	1
TCATCG	1																																																																																																																																																	1
TCATCT	1																																																																																																																																																	1
TCCACT	1																																																																																																																																																	1
TCCTCT	2	1																																																																																																																																																3
TCCTTT	1																																																																																																																																																	1
TCGACT	1																																																																																																																																																	1
TCGCAA	1																																																																																																																																																	1
TCGCCA			1																																																																																																																																															1
TCGTCC	1																																																																																																																																																	1
TCTACG	1																																																																																																																																																	1
TCTGCT	2																																																																																																																																																	2
TCTTCA	3	1																																																																																																																																																4
TCTTCC	4																																																																																																																																																	4
TCTTTC	1																																																																																																																																																	1
TCTTTT	3	2																																																																																																																																																5
TGAACC	1																																																																																																																																																	1
TGCAAA	1																																																																																																																																																	1
TGCAAG	1																																																																																																																																																	1
TGCAGC	1																																																																																																																																																	1
TGCATA	3																																																																																																																																																	3
TGCCAC	1																																																																																																																																																	1
TGCGGT	1																																																																																																																																																	1
TGCGTA	1																																																																																																																																																	1
TGCGTT			1																																																																																																																																															1
TGCTGA		1																																																																																																																																																1
TGCTGT		1																																																																																																																																																1
TGGCAG	1																																																																																																																																																	1
TGGCGA	1																																																																																																																																																	1
TGGTGA			1																																																																																																																																															1
TGTATA	3																																																																																																																																																	3
TGTATT	1																																																																																																																																																	1
TGTCAC			1																																																																																																																																															1
TGTGCA	1																																																																																																																																																	1
TGTTAT			1																																																																																																																																															1
TGTTCA	2																																																																																																																																																	2
TGTTGC	1																																																																																																																																																	1
TGTTTA	1																																																																																																																																																	1
TGTTTT	2																																																																																																																																																	2
TTACAA	1																																																																																																																																																	1
TTACAG		1																																																																																																																																																1
TTACCG	2																																																																																																																																																	2
TTACGT		1																																																																																																																																																1
TTAGGG	2																																																																																																																																																	2
TTATAT	1																																																																																																																																																	1
TTATCC		1																																																																																																																																																1
TTATTT	2	1																																																																																																																																																3
TTCAAA	1																																																																																																																																																	1
TTCCAC	1																																																																																																																																																	1
TTCCTC	2																																																																																																																																																	2
TTCGCA	1																																																																																																																																																	1
TTCGCT	1																																																																																																																																																	1
TTCTAG	1																																																																																																																																																	1
TTCTCC	3																																																																																																																																																	3
TTCTGC	1																																																																																																																																																	1
TTCTTT	4	1	1																																																																																																																																															6
TTGAAA	1																																																																																																																																																	1
TTGCAC	1																																																																																																																																																	1
TTGTTA			1																																																																																																																																															1
TTGTTC	1																																																																																																																																																	1
TTTAAT	1				1																																																																																																																																													2
TTTACA	2																																																																																																																																																	2
TTTACG												1																																																																																																																																						1
TTTATT	6	1																																																																																																																																																7
TTTCAT	1																																																																																																																																																	1
TTTCCT	1																																																																																																																																																	1
TTTCTC		1																																																																																																																																																1
TTTCTG	1																																																																																																																																																	1
TTTCTT	3				1																																																																																																																																													4
TTTTAA	1																																																																																																																																																	1
TTTTAT	2		1																																																																																																																																															3
TTTTCA	1	1																																																																																																																																																2
TTTTCC	2	1																																																																																																																																																3
TTTTCT	5	1		1																																																																																																																																														7
TTTTGC	1																																																																																																																																																	1
TTTTTA	9	1																																																																																																																																																10
TTTTTC	4	3																																																																																																																																																7
TTTTTG	2																																																																																																																																																	2

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	146	147	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	479	361	230	144	88	64	31	13	17	10	9	1		2	1	2		1																																																																																																															1453
AC/GT	-	-	-	119	39	22	6	4	5	2	1	1		1																																																																																																																																				200
AG/CT	-	-	-	28	5	5	1	1		1	3	1																																																																																																																																						45
AT/AT	-	-	-	766	229	136	84	55	42	30	19	20	14	12	7	10	8	8	4	2	2	4	1	1			1																																																																																																																							1455
CG/CG	-	-	-	11																																																																																																																																														11
AAC/GTT	-	-	10	4	1	2	1	2	1	1	1					1						1																																																																																																																												25
AAG/CTT	-	-	70	26	8	7	2	7	3	2	1				1	1								1																																																																																																																										129
AAT/ATT	-	-	62	20	7	3					1	1					1														1																																											1						1																																																																		98
ACC/GGT	-	-	17	2	2																																																																																																																																													21
ACG/CGT	-	-	8	2																																																																																																																																														10
ACT/AGT	-	-	6		2																	1																																																																																																																											1	10
AGC/CTG	-	-	36	9	5			1																																																																																																																																										51
AGG/CCT	-	-	57	16	9	5	4	1		1	2		1																																																																																																																																					96
ATC/ATG	-	-	32	8	3	2		1	1																																																																																																																																									47
CCG/CGG	-	-	4	2																																																																																																																																														6
AAAC/GTTT	-	16	6	2	2			2			1	1	1								1																																																																																																																													32
AAAG/CTTT	-	14	2	3		2	1																			1																																																																																																																								23
AAAT/ATTT	-	114	33	11	5	3	1								1																																													1																																																																																						169
AACC/GGTT	-	1																																																																																																																																																1
AACG/CGTT	-	11	6	5	3			1																																																																																																																																										26
AAGC/CTTG	-	4	2			1																																																																																																																																												7
AAGG/CCTT	-	6	2	1																																																																																																																																														9
AAGT/ACTT	-	1																																																																																																																																																1
AATC/ATTG	-	2	1		1																																																																																																																																													4
AATG/ATTC	-	2	1			1														1																																																																																																																														5
AATT/AATT	-	11	3	1	1																																																																																																																																													16
ACAG/CTGT	-		1																																																																																			1																																																												2
ACAT/ATGT	-	22	11	7	4		1	1	3	1						1		1																					1						1				2						1			1																																											1											1																														1				61
ACCG/CGGT	-		1				1																																																																																																																																											2
ACCT/AGGT	-	2																																																																																																																																																2
ACGC/CGTG	-	3																																																																																																																																																3
ACGG/CCGT	-	2																																																																																																																																																2
ACGT/ACGT	-	8	3																																																																																																																																															11
ACTC/AGTG	-			1	1																																																																																																																																													2
ACTG/AGTC	-	1																																																																																																																																																1
AGAT/ATCT	-	2																																																																																																																																																2
AGCG/CGCT	-		1																																																																																																																																															1
AGCT/AGCT	-	13	4	1																																																																																																																																														18
AGGC/CCTG	-	1		1																																																																																																																																														2
ATCC/ATGG	-	1		1	1																																																																																																																																													3
ATCG/ATCG	-	1																																																																																																																																																1
ATGC/ATGC	-	1	1																																																																																																																																															2
AAAAC/GTTTT	37	8	1	2		1																																																																																																																																												49
AAAAG/CTTTT	67	13	8	4			1	2																																																																																																																																										95
AAAAT/ATTTT	272	53	23	7	4	1		1			1	1															1																																																																																																																							364
AAACC/GGTTT	1																																																																																																																																																	1
AAACG/CGTTT	4	1	2		1		1																																																																																																																																											9
AAACT/AGTTT	1																																																																																																																																																	1
AAAGC/CTTTG	17	13	1																																																																																																																																															31
AAAGG/CCTTT	14				1																																																																																																																																													15
AAAGT/ACTTT			1																																																																																																																																															1
AAATC/ATTTG	3			1																																																																																																																																														4
AAATG/ATTTC	9	2																																																																																																																																																11
AAATT/AATTT	24	2		1	1																																																																																																																																													28
AACAC/GTGTT	4																																																																																																																																																	4
AACAG/CTGTT	6																																																																																																																																																	6
AACAT/ATGTT	4	3	2																																																																																																																																															9
AACCC/GGGTT	1																																																																																																																																																	1
AACCG/CGGTT	1																																																																																																																																																	1
AACGC/CGTTG	3	3		1																																																																																																																																														7
AACGG/CCGTT	2																																																																																																																																																	2
AACGT/ACGTT	1		1																																																																																																																																															2
AACTG/AGTTC	1		1																																																																																																																																															2
AAGAG/CTCTT	7	1																																																																																																																																																8
AAGAT/ATCTT		1		1																																																																																																																																														2
AAGCC/CTTGG	2		1																																																																																																																																															3
AAGCG/CGCTT	16	1																																																																																																																																																17
AAGCT/AGCTT	4	2																																																																																																																																																6
AAGGC/CCTTG	2																																																																																																																																																	2
AAGGG/CCCTT	1		1	1																																																																																																																																														3
AAGGT/ACCTT	1																																																																																																																																																	1
AAGTC/ACTTG	1																																																																																																																																																	1
AAGTG/ACTTC	7		1																																																																																																																																															8
AATAC/ATTGT	5	5																																																																																																																																																10
AATAT/ATATT	69	4	1																																																																																																																																															74
AATCC/ATTGG	1	1																																																																																																																																																2
AATCG/ATTCG		2																																																																																																																																																2
AATGC/ATTGC	7	1																																																																																																																																																8
AATGG/ATTCC	1																																																																																																																																																	1
AATGT/ACATT	4																																																																																																																																																	4
AATTC/AATTG	2	1																																																																																																																																																3
ACAGC/CTGTG	12	2		1																																																																																																																																														15
ACAGT/ACTGT	3																																																																																																																																																	3
ACATC/ATGTG	7	1																																																																																																																																																8
ACATG/ATGTC	1																																																																																																																																																	1
ACCAG/CTGGT		1																																																																																																																																																1
ACCAT/ATGGT	1																																																																																																																																																	1
ACCGC/CGGTG	1																																																																																																																																																	1
ACCGT/ACGGT	1																																																																																																																																																	1
ACCTC/AGGTG	5																																																																																																																																																	5
ACCTG/AGGTC	1	2																																																																																																																																																3
ACGAG/CGTCT	1																																																																																																																																																	1
ACGCC/CGTGG	5																																																																																																																																																	5
ACGCG/CGCGT	1																																																																																																																																																	1
ACGCT/AGCGT	4																																																																																																																																																	4
ACGGC/CCGTG	1																																																																																																																																																	1
ACGTC/ACGTG	1																																																																																																																																																	1
ACTAT/AGTAT	2	1		1																																																																																																																																														4
ACTCC/AGTGG	3																																																																																																																																																	3
ACTCG/AGTCG	1																																																																																																																																																	1
ACTGC/AGTGC	1																																																																																																																																																	1
ACTGG/AGTCC	1																																																																																																																																																	1
AGAGC/CTCTG	5																																																																																																																																																	5
AGAGG/CCTCT	5	1																																																																																																																																																6
AGATC/ATCTG	1																																																																																																																																																	1
AGATG/ATCTC	3																																																																																																																																																	3
AGCAT/ATGCT	7	3		1																																																																																																																																														11
AGCCT/AGGCT	1																																																																																																																																																	1
AGCGC/CGCTG	8																																																																																																																																																	8
AGCGG/CCGCT	2																																																																																																																																																	2
AGGAT/ATCCT	1	1																																																																																																																																																2
AGGGG/CCCCT	2	1																																																																																																																																																3
ATATC/ATATG	7																																																																																																																																																	7
ATCCC/ATGGG	1																																																																																																																																																	1
ATCGC/ATGCG	5	1																																																																																																																																																6
ATGCC/ATGGC		1																																																																																																																																																1
CCCCG/CGGGG	2																																																																																																																																																	2
CCGCG/CGCGG	2																																																																																																																																																	2
AAAAAC/GTTTTT	12	2																																																																																																																																																14
AAAAAG/CTTTTT	59	14	1	3	1			1																																																																																																																																										79
AAAAAT/ATTTTT	48	5	2																																																																																																																																															55
AAAACG/CGTTTT	1																																																																																																																																																	1
AAAAGC/CTTTTG	4				1																																																																																																																																													5
AAAAGG/CCTTTT	13	4	1																																																																																																																																															18
AAAAGT/ACTTTT	1																																																																																																																																																	1
AAAATG/ATTTTC	6	1																																																																																																																																																7
AAAATT/AATTTT	8				1																																																																																																																																													9
AAACAC/GTGTTT	1																																																																																																																																																	1
AAACAG/CTGTTT	3																																																																																																																																																	3
AAACAT/ATGTTT	3																																																																																																																																																	3
AAACCT/AGGTTT	4	1																																																																																																																																																5
AAACGC/CGTTTG		3	1				1																																																																																																																																											5
AAACGT/ACGTTT		3										1																																																																																																																																						4
AAAGAG/CTCTTT	5	2																																																																																																																																																7
AAAGAT/ATCTTT	2	1																																																																																																																																																3
AAAGCG/CGCTTT	5																																																																																																																																																	5
AAAGGC/CCTTTG	1																																																																																																																																																	1
AAAGGG/CCCTTT	6																																																																																																																																																	6
AAAGGT/ACCTTT	1		1																																																																																																																																															2
AAAGTG/ACTTTC	2		1		1																																																																																																																																													4
AAATAC/ATTTGT	1																																																																																																																																																	1
AAATAG/ATTTCT	1																																																																																																																																																	1
AAATAT/ATATTT	3	1																																																																																																																																																4
AAATGC/ATTTGC	4	1																																																																																																																																																5
AAATGT/ACATTT	5																																																																																																																																																	5
AAATTC/AATTTG	1																																																																																																																																																	1
AAATTG/AATTTC	3																																																																																																																																																	3
AACAAG/CTTGTT	1																																																																																																																																																	1
AACAAT/ATTGTT	6		2																																																																																																																																															8
AACACG/CGTGTT				1																																																																																																																																														1
AACAGC/CTGTTG	3	2			1													1																																																																																																																																7
AACAGG/CCTGTT	1																																																																																																																																																	1
AACAGT/ACTGTT	1		1																																																																																																																																															2
AACATC/ATGTTG	1																																																																																																																																																	1
AACATG/ATGTTC	2																																																																																																																																																	2
AACATT/AATGTT	2																																																																																																																																																	2
AACCAG/CTGGTT	5																																																																																																																																																	5
AACCCT/AGGGTT	5																																																																																																																																																	5
AACCGC/CGGTTG	4	1																																																																																																																																																5
AACCTG/AGGTTC	1																																																																																																																																																	1
AACCTT/AAGGTT	1																																																																																																																																																	1
AACGAG/CGTTCT				1				1																																																																																																																																										2
AACGAT/ATCGTT	1		1																																																																																																																																															2
AACGCT/AGCGTT	2																																																																																																																																																	2
AACGGC/CCGTTG	3	1																																																																																																																																																4
AACGGT/ACCGTT	3																																																																																																																																																	3
AACGTC/ACGTTG	1																																																																																																																																																	1
AACGTG/ACGTTC	1																																																																																																																																																	1
AACGTT/AACGTT	1																																																																																																																																																	1
AACTAC/AGTTGT	1	1																																																																																																																																																2
AACTAG/AGTTCT	1																																																																																																																																																	1
AACTGC/AGTTGC	5																																																																																																																																																	5
AACTGT/ACAGTT		1																																																																																																																																																1
AACTTC/AAGTTG	1																																																																																																																																																	1
AAGACG/CGTCTT	2																																																																																																																																																	2
AAGAGC/CTCTTG	1																																																																																																																																																	1
AAGAGG/CCTCTT	19	2																																																																																																																																																21
AAGATG/ATCTTC	6	1																																																																																																																																																7
AAGCAG/CTGCTT	7		1																																																																																																																																															8
AAGCCG/CGGCTT	2			1																																																																																																																																														3
AAGCGC/CGCTTG	1																																																																																																																																																	1
AAGCGG/CCGCTT	7																																																																																																																																																	7
AAGCGT/ACGCTT	2																																																																																																																																																	2
AAGCTC/AGCTTG	1																																																																																																																																																	1
AAGGAG/CCTTCT	12	1	1																																																																																																																																															14
AAGGAT/ATCCTT	1	2																																																																																																																																																3
AAGGCG/CCTTCG	2																																																																																																																																																	2
AAGGGG/CCCCTT	1																																																																																																																																																	1
AAGGTC/ACCTTG	1																																																																																																																																																	1
AAGGTG/ACCTTC	3	1																																																																																																																																																4
AAGTAG/ACTTCT	2																																																																																																																																																	2
AAGTCG/ACTTCG	1																																																																																																																																																	1
AAGTGC/ACTTGC	2																																																																																																																																																	2
AAGTGG/ACTTCC	2	1	1																																																																																																																																															4
AATACG/ATTCGT	1																																																																																																																																																	1
AATAGC/ATTGCT	2		1																																																																																																																																															3
AATAGT/ACTATT	1																																																																																																																																																	1
AATATG/ATATTC	1																																																																																																																																																	1
AATATT/AATATT	5																																																																																																																																																	5
AATCGC/ATTGCG	4																																																																																																																																																	4
AATCGT/ACGATT	1																																																																																																																																																	1
AATGAG/ATTCTC	2																																																																																																																																																	2
AATGCG/ATTCGC	1	1																																																																																																																																																2
AATGCT/AGCATT	2																																																																																																																																																	2
AATGGC/ATTGCC	2																																																																																																																																																	2
AATGGT/ACCATT	1																																																																																																																																																	1
AATTAC/AATTGT	2																																																																																																																																																	2
AATTAT/AATTAT	3																																																																																																																																																	3
ACACAT/ATGTGT	3			1			1																																																																																																																																											5
ACACGC/CGTGTG	2																																																																																																																																																	2
ACACGG/CCGTGT		1																																																																																																																																																1
ACACGT/ACGTGT	2																																																																																																																																																	2
ACACTC/AGTGTG	1																																																																																																																																																	1
ACAGCG/CGCTGT	1																																																																																																																																																	1
ACAGCT/AGCTGT	1																																																																																																																																																	1
ACAGGC/CCTGTG		1																																																																																																																																																1
ACAGGG/CCCTGT	1																																																																																																																																																	1
ACAGTG/ACTGTC			1																																																																																																																																															1
ACATAT/ATATGT	23						1																																																																																																																																											24
ACATGC/ATGTGC	3		1																																																																																																																																															4
ACATGT/ACATGT	2	1																																																																																																																																																3
ACCACT/AGTGGT	3																																																																																																																																																	3
ACCATC/ATGGTG	2		1																																																																																																																																															3
ACCCGC/CGGGTG	1																																																																																																																																																	1
ACCCGT/ACGGGT	1																																																																																																																																																	1
ACCCTC/AGGGTG	2																																																																																																																																																	2
ACCGCC/CGGTGG	1																																																																																																																																																	1
ACCGCT/AGCGGT	4	1																																																																																																																																																5
ACCTCT/AGAGGT	1																																																																																																																																																	1
ACGAGG/CCTCGT	1																																																																																																																																																	1
ACGATC/ATCGTG	1																																																																																																																																																	1
ACGATG/ATCGTC	2	1																																																																																																																																																3
ACGCAG/CGTCTG	1																																																																																																																																																	1
ACGCAT/ATGCGT	3				1																																																																																																																																													4
ACGCCT/AGGCGT	1																																																																																																																																																	1
ACGCTG/AGCGTC	1																																																																																																																																																	1
ACGGCT/AGCCGT	1																																																																																																																																																	1
ACGGGG/CCCCGT	1																																																																																																																																																	1
ACGTAG/ACGTCT	1																																																																																																																																																	1
ACGTAT/ACGTAT	3	1																																																																																																																																																4
ACTCCC/AGTGGG	1		1																																																																																																																																															2
ACTCGG/AGTCCG	1																																																																																																																																																	1
ACTGCC/AGTGGC	3	1																																																																																																																																																4
ACTGCG/AGTCGC	2																																																																																																																																																	2
ACTGCT/AGCAGT	2																																																																																																																																																	2
AGAGCG/CGCTCT		1																																																																																																																																																1
AGAGGC/CCTCTG	1	3																																																																																																																																																4
AGAGGG/CCCTCT	4																																																																																																																																																	4
AGATAT/ATATCT	1																																																																																																																																																	1
AGCAGG/CCTGCT	2																																																																																																																																																	2
AGCATC/ATGCTG		1																																																																																																																																																1
AGCATG/ATGCTC	1																																																																																																																																																	1
AGCCGC/CGGCTG	3																																																																																																																																																	3
AGCGAT/ATCGCT	1																																																																																																																																																	1
AGCGGC/CCGCTG	5	1	1																																																																																																																																															7
AGCGGG/CCCGCT	3																																																																																																																																																	3
AGCTCC/AGCTGG		1																																																																																																																																																1
AGCTGC/AGCTGC	1																																																																																																																																																	1
AGGCGC/CCTGCG	2																																																																																																																																																	2
AGGCGG/CCGCCT	3																																																																																																																																																	3
AGGGCG/CCCTCG	1	1																																																																																																																																																2
AGGGGC/CCCCTG	2																																																																																																																																																	2
ATATCC/ATATGG	8																																																																																																																																																	8
ATATGC/ATATGC	5																																																																																																																																																	5
ATCCCC/ATGGGG	1																																																																																																																																																	1
ATCGCC/ATGGCG	5		1																																																																																																																																															6
ATCGGC/ATGCCG	1																																																																																																																																																	1
ATGCGC/ATGCGC	1																																																																																																																																																	1
CCCCCG/CGGGGG	1																																																																																																																																																	1
