Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-20/megassr/results/hub_GCA_037936935.1/fasta/hub_GCA_037936935.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              35
Total size of examined sequences (bp):           5335245
Total number of identified SSRs:                 36
Number of SSR containing sequences:              19
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	9
3	19
5	2
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	5	1	6
GC	-	-	-	2	1	3
AGC	-	-		1		1
CAG	-	-	1			1
CCA	-	-		1		1
CCG	-	-	4			4
CGC	-	-	2			2
CTG	-	-	4		1	5
GCC	-	-	1			1
GCG	-	-	1			1
GGC	-	-	1			1
GTC	-	-	1			1
GTG	-	-	1			1
GCGCT	1					1
GGCGT	1					1
ATGTTC			1			1
CAGCGC	1					1
GCGCCA	1					1
GCGCTG	1					1
GCTGGC	1					1
GTTGAA	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
CG/CG	-	-	-	7	2	9
ACC/GGT	-	-	1	1		2
ACG/CGT	-	-	1			1
AGC/CTG	-	-	5	1	1	7
CCG/CGG	-	-	9			9
ACGCC/CGTGG	1					1
AGCGC/CGCTG	1					1
AACATG/ATGTTC			1			1
AACTTC/AAGTTG	1					1
AGCGCC/CGCTGG	4					4
