Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_037178145.1/fasta/hub_GCA_037178145.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              141
Total size of examined sequences (bp):           33820697
Total number of identified SSRs:                 23106
Number of SSR containing sequences:              119
Number of sequences containing more than 1 SSR:  105
Number of SSRs present in compound formation:    6736


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	57
2	12252
3	2299
4	1038
5	867
6	6593

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	146	147	148	149	150	151	152	153	154	155	156	157	158	159	160	161	162	163	164	165	166	167	168	169	170	171	172	173	174	175	176	177	178	179	180	181	182	183	184	185	186	187	188	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1	1	1	1					1		2												1	1																																																																															1																																																											1							11
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																								1				1																																																																																																																																														2
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3	4	1			2				2	1		1	1				1					1	1						1							1			1		1						1																																																																					1																																																					24
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					2							2				1				1		1			1								1	2									1																1		1			1													1														1									1																									1																																												1	20
AC	-	-	-	369	380	288	224	147	105	69	49	38	30	17	11	8	6	5	3	1	1		1		1	1																																																									1																																																																																																								1755
AG	-	-	-	285	134	40	10	2																																																																																																																																																																																			471
AT	-	-	-	144	230	217	120	48	27	7	1																																																																																																																																																																																794
CA	-	-	-	743	451	398	319	166	124	81	53	49	25	20	16	12	9	8	3	5	3	1			1	2				1																																																																																																																					1																																								2491
CG	-	-	-	64	10																																																																																																																																																																																						74
CT	-	-	-	289	137	50	5	1																																																																																																																																																																																			482
GA	-	-	-	253	117	54	27	2																																																																																																																																																																																			453
GC	-	-	-	60	10	1																																																																																																																																																																																					71
GT	-	-	-	503	455	323	240	131	134	78	66	36	26	17	13	7	7	6	4	3	1	1						1		1		1																																																																																																																																																											2054
TA	-	-	-	132	169	129	80	20	10	3	2	1																																																																																																																																																																															546
TC	-	-	-	272	150	47	15	1		1																																																																																																																																																																																	486
TG	-	-	-	773	458	431	286	181	118	91	62	56	36	27	19	9	4	9	3	1			3		3	1		1				1																											1					1																																																																																																																											2575
AAC	-	-	7																																																																																																																																																																																								7
AAG	-	-	1																																																																																																																																																																																								1
AAT	-	-	5	1																																																																																																																																																																																							6
ACA	-	-	3	1	1		1																																																																																																																																																																																				6
ACC	-	-	26	6	2		1	1		1																																																																																																																																																																																	37
ACG	-	-	15	2		1																																																																																																																																																																																					18
ACT	-	-	1						1																																																																																																																																																																																		2
AGA	-	-	1																																																																																																																																																																																								1
AGC	-	-	70	32	16	6	2		1																																																																																																																																																																																		127
AGG	-	-	15	4	2																																																																																																																																																																																						21
AGT	-	-	1																																																																																																																																																																																								1
ATC	-	-	2																																																																																																																																																																																								2
ATT	-	-	3																																																																																																																																																																																								3
CAA	-	-	6	1																																																																																																																																																																																							7
CAC	-	-	46	41	5	4			1																																																																																																																																																																																		97
CAG	-	-	75	36	16	6	3		2																																																																																																																																																																																		138
CAT	-	-	4																																																																																																																																																																																								4
CCA	-	-	78	32	11	5	1		1		1																																																																																																																																																																																129
CCG	-	-	42	12	5	2																																																																																																																																																																																					61
CCT	-	-	39	13	11	3	1		1					1									1																																																																																																																																																																				70
CGA	-	-	19	4	3																																																																																																																																																																																						26
CGC	-	-	47	16	2	1		2																																																																																																																																																																																			68
CGG	-	-	32	14		1																																																																																																																																																																																					47
CGT	-	-	17	3	1																																																																																																																																																																																						21
CTC	-	-	21	9	5	1	2																																																																																																																																																																																				38
CTG	-	-	75	41	10	4	2	1																																																																																																																																																																																			133
CTT	-	-	1																																																																																																																																																																																								1
GAC	-	-	13	5																																																																																																																																																																																							18
GAG	-	-	26	8	2	2																																																																																																																																																																																					38
GAT	-	-	4			2																																																																																																																																																																																					6
GCA	-	-	110	54	38	11	5		2																																																																																																																																																																																		220
GCC	-	-	48	11	2	2	1		1																																																																																																																																																																																		65
GCG	-	-	43	11	2	1			1																																																																																																																																																																																		58
GCT	-	-	101	76	15	7	5	2		1																																																																																																																																																																																	207
GGA	-	-	45	16	4	6	2	1		1																																																																																																																																																																																	75
GGC	-	-	43	17	6				1																																																																																																																																																																																		67
GGT	-	-	71	22	13	4			1	1																																																																																																																																																																																	112
GTC	-	-	4	2		1																																																																																																																																																																																					7
GTG	-	-	42	23	7	4																																																																																																																																																																																					76
GTT	-	-	2			1																																																																																																																																																																																					3
TAA	-	-	3																																																																																																																																																																																								3
TAG	-	-	1																																																																																																																																																																																								1
TAT	-	-	4																																																																																																																																																																																								4
TCA	-	-	1																																																																																																																																																																																								1
TCC	-	-	16	3	1																																																																																																																																																																																						20
TCG	-	-	9	6																																																																																																																																																																																							15
TCT	-	-	1																																																																																																																																																																																								1
TGA	-	-	2																																																																																																																																																																																								2
TGC	-	-	74	35	11	7	5	1																																																																																																																																																																																			133
TGG	-	-	42	14	9	1	3									1																																																																																																																																																																											70
TGT	-	-	3	2																																																																																																																																																																																							5
TTA	-	-	6																																																																																																																																																																																								6
TTG	-	-	9	3	1	1																																																																																																																																																																																					14
AAAC	-	2																																																																																																																																																																																									2
AAAG	-	1																																																																																																																																																																																									1
AAAT	-	1																																																																																																																																																																																									1
AACA	-		1																																																																																																																																																																																								1
AAGC	-			1																																																																																																																																																																																							1
AAGG	-			1																																																																																																																																																																																							1
ACAG	-	6	1																																																																																																																																																																																								7
ACAT	-	2																																																																																																																																																																																									2
ACCA	-	2	1																																																																																																																																																																																								3
ACCC	-	6	2	1																																																																																																																																																																																							9
ACCT	-	1																																																																																																																																																																																									1
ACGC	-	6	3																																																																																																																																																																																								9
ACGG	-		1																																																																																																																																																																																								1
ACTC	-	1																																																																																																																																																																																									1
AGAA	-	1																																																																																																																																																																																									1
AGAC	-	3	2																																																																																																																																																																																								5
AGAT	-	1																																																																																																																																																																																									1
AGCA	-	1	2																																																																																																																																																																																								3
AGCG	-	1																																																																																																																																																																																									1
AGGA	-		2																																																																																																																																																																																								2
AGGC	-	1																																																																																																																																																																																									1
AGGG	-	16	1	2																																																																																																																																																																																							19
AGTG	-	1																																																																																																																																																																																									1
ATAC	-	2																																																																																																																																																																																									2
ATAG	-	1																																																																																																																																																																																									1
ATGC	-	1																																																																																																																																																																																									1
ATGG	-		2					1																																																																																																																																																																																			3
ATGT	-	3	1																																																																																																																																																																																								4
ATTT	-	1																																																																																																																																																																																									1
CAAA	-	1																																																																																																																																																																																									1
CAAC	-	2																																																																																																																																																																																									2
CAAG	-	3																																																																																																																																																																																									3
CACC	-	10	1	1	1																																																																																																																																																																																						13
CACG	-	23	6	1			1																																																																																																																																																																																				31
CACT	-	1																																																																																																																																																																																									1
CAGA	-	3																																																																																																																																																																																									3
CAGC	-	1																																																																																																																																																																																									1
CAGG	-	2																																																																																																																																																																																									2
CATA	-	1																																																																																																																																																																																									1
CATC	-	3	1																																																																																																																																																																																								4
CATG	-	3																																																																																																																																																																																									3
CCAA	-		1																																																																																																																																																																																								1
CCAC	-	11	2																																																																																																																																																																																								13
CCAT	-	2																																																																																																																																																																																									2
CCCA	-	22	5	4																																																																																																																																																																																							31
CCCG	-	1																																																																																																																																																																																									1
CCCT	-	42	11	5	3	1						1																																																																																																																																																																															63
CCGA	-		1																																																																																																																																																																																								1
CCGC	-	1																																																																																																																																																																																									1
CCGT	-	1		1																																																																																																																																																																																							2
CCTA	-		1																																																																																																																																																																																								1
CCTC	-	22	11		2																																																																																																																																																																																						35
CCTG	-	4																																																																																																																																																																																									4
CCTT	-	3																																																																																																																																																																																									3
CGAC	-	1																																																																																																																																																																																									1
CGAG	-	4																																																																																																																																																																																									4
CGCA	-	17	2																																																																																																																																																																																								19
CGCC	-	1	1																																																																																																																																																																																								2
CGCT	-		1																																																																																																																																																																																								1
CGGA	-	1																																																																																																																																																																																									1
CGGC	-	3		1																																																																																																																																																																																							4
CGTC	-		1																																																																																																																																																																																								1
CGTG	-	8	1																																																																																																																																																																																								9
CTAT	-	1																																																																																																																																																																																									1
CTCA	-	1																																																																																																																																																																																									1
CTCC	-	17	6	1	2																																																																																																																																																																																						26
CTCG	-	3	2																																																																																																																																																																																								5
CTGC	-	4	1		1																																																																																																																																																																																						6
CTGT	-	3	1																																																																																																																																																																																								4
CTTC	-	1																																																																																																																																																																																									1
CTTG	-		1																																																																																																																																																																																								1
GAAG	-		1																																																																																																																																																																																								1
GACA	-		1																																																																																																																																																																																								1
GACC	-	1																																																																																																																																																																																									1
GACG	-		1																																																																																																																																																																																								1
GAGC	-	5	3																																																																																																																																																																																								8
GAGG	-	32	15	2	2	1										1																																																																																																																																																																											53
GAGT	-	1																																																																																																																																																																																									1
GCAA	-	1																																																																																																																																																																																									1
GCAC	-	12	1																																																																																																																																																																																								13
GCAG	-	1		1		1																																																																																																																																																																																					3
GCAT	-	1	1																																																																																																																																																																																								2
GCCA	-	1																																																																																																																																																																																									1
GCCC	-	2																																																																																																																																																																																									2
GCCT	-	2					1																																																																																																																																																																																				3
GCGA	-	1																																																																																																																																																																																									1
GCGG	-	2																																																																																																																																																																																									2
GCGT	-	11	6																																																																																																																																																																																								17
GCTC	-	3																																																																																																																																																																																									3
GCTG	-	1																																																																																																																																																																																									1
GCTT	-	2																																																																																																																																																																																									2
GGAC	-		1																																																																																																																																																																																								1
GGAG	-	23	6	4																																																																																																																																																																																							33
GGAT	-	3																																																																																																																																																																																									3
GGCA	-	2	1																																																																																																																																																																																								3
GGCG	-	2																																																																																																																																																																																									2
GGCT	-	1																																																																																																																																																																																									1
GGGA	-	32	5	4	1	1																																																																																																																																																																																					43
GGGC	-	7																																																																																																																																																																																									7
GGGT	-	14	4	2																																																																																																																																																																																							20
GGTC	-	1																																																																																																																																																																																									1
GGTG	-	14	4																																																																																																																																																																																								18
GTAG	-	1																																																																																																																																																																																									1
GTCG	-	2																																																																																																																																																																																									2
GTCT	-	5	1																																																																																																																																																																																								6
GTGC	-	36	4	2	1	1																																																																																																																																																																																					44
GTGG	-	12	2	4																																																																																																																																																																																							18
TACA	-	2																																																																																																																																																																																									2
TACC	-	1																																																																																																																																																																																									1
TAGA	-	1																																																																																																																																																																																									1
TAGG	-	1																																																																																																																																																																																									1
TATC	-		1																																																																																																																																																																																								1
TATG	-	7	1					1																																																																																																																																																																																			9
TCCC	-	12	2	1	1			1																																																																																																																																																																																			17
TCCT	-	2	1																																																																																																																																																																																								3
TCGC	-	1																																																																																																																																																																																									1
TCTA	-	1																																																																																																																																																																																									1
TCTG	-	8																																																																																																																																																																																									8
TGAG	-	1																																																																																																																																																																																									1
TGCA	-	1																																																																																																																																																																																									1
TGCC	-	6		1																																																																																																																																																																																							7
TGCG	-	15	1	1																																																																																																																																																																																							17
TGCT	-	4																																																																																																																																																																																									4
TGGA	-	43	30	41	22	18	19	10	8	6	6		2	2	1		1					1																																																																																																																																																																					210
TGGG	-	5	4																																																																																																																																																																																								9
TGTA	-	1	1																																																																																																																																																																																								2
TGTC	-	4		1	2																																																																																																																																																																																						7
TGTT	-	1																																																																																																																																																																																									1
TTAT	-	1																																																																																																																																																																																									1
TTCC	-	2																																																																																																																																																																																									2
TTGC	-	2																																																																																																																																																																																									2
TTGG	-	1			1																																																																																																																																																																																						2
TTGT	-	2	2																																																																																																																																																																																								4
TTTA	-	2																																																																																																																																																																																									2
TTTG	-	5																																																																																																																																																																																									5
AAAAC	8	1																																																																																																																																																																																									9
AAAAG	1																																																																																																																																																																																										1
AAAAT	1																																																																																																																																																																																										1
AAACA	7																																																																																																																																																																																										7
AAAGA	1																																																																																																																																																																																										1
AAAGG	3																																																																																																																																																																																										3
AAATA	1																																																																																																																																																																																										1
AACAA	3																																																																																																																																																																																										3
AACAC	2																																																																																																																																																																																										2
AACCC	1	1																																																																																																																																																																																									2
AACGA	1																																																																																																																																																																																										1
AAGAG	1																																																																																																																																																																																										1
AAGCA	1																																																																																																																																																																																										1
AAGGG	2	1																																																																																																																																																																																									3
AAGTG	1																																																																																																																																																																																										1
AATAT	1																																																																																																																																																																																										1
AATTG		1																																																																																																																																																																																									1
ACAAA	3																																																																																																																																																																																										3
ACAAC	2																																																																																																																																																																																										2
ACACA	1																																																																																																																																																																																										1
ACAGC	1																																																																																																																																																																																										1
ACAGT				1																																																																																																																																																																																							1
ACCCA	1	1																																																																																																																																																																																									2
ACCCC	3																																																																																																																																																																																										3
ACCCG		1																																																																																																																																																																																									1
ACCCT	26	3	1																																																																																																																																																																																								30
ACCTC	4	3					1																																																																																																																																																																																				8
ACGAG	1																																																																																																																																																																																										1
ACGCC	1																																																																																																																																																																																										1
ACGGC	1																																																																																																																																																																																										1
ACTGT	1																																																																																																																																																																																										1
AGAAG	1																																																																																																																																																																																										1
AGAGC	1	1																																																																																																																																																																																									2
AGAGG	6																																																																																																																																																																																										6
AGCAC	2																																																																																																																																																																																										2
AGCAG	1																																																																																																																																																																																										1
AGCGC	1																																																																																																																																																																																										1
AGCTC	1																																																																																																																																																																																										1
AGGAA	1																																																																																																																																																																																										1
AGGAG	2		1																																																																																																																																																																																								3
AGGGA	7	4																																																																																																																																																																																									11
AGGGC	1																																																																																																																																																																																										1
AGGGG	13	2																																																																																																																																																																																									15
AGGGT	1																																																																																																																																																																																										1
AGGTG	2	1	1																																																																																																																																																																																								4
AGGTT	1																																																																																																																																																																																										1
ATAAA	1																																																																																																																																																																																										1
ATAAT	1																																																																																																																																																																																										1
ATATA	1																																																																																																																																																																																										1
ATGGG		1																																																																																																																																																																																									1
ATTGC	1																																																																																																																																																																																										1
ATTTT		1																																																																																																																																																																																									1
CAAAA	4																																																																																																																																																																																										4
CAAAC	1																																																																																																																																																																																										1
CAAAG	4																																																																																																																																																																																										4
CAACA	1																																																																																																																																																																																										1
CAAGG	1																																																																																																																																																																																										1
CACAC	2	1																																																																																																																																																																																									3
CACAG	2																																																																																																																																																																																										2
CACCC	3							1																																																																																																																																																																																			4
CACCG		1																																																																																																																																																																																									1
CACCT	1																																																																																																																																																																																										1
CACGC	1																																																																																																																																																																																										1
CACGG	1																																																																																																																																																																																										1
CACTC	1																																																																																																																																																																																										1
CACTG	1																																																																																																																																																																																										1
CAGCA	1																																																																																																																																																																																										1
CATCC	1																																																																																																																																																																																										1
CATGG	1																																																																																																																																																																																										1
CCACA	2																																																																																																																																																																																										2
CCACC	9	1																																																																																																																																																																																									10
CCACG	1																																																																																																																																																																																										1
CCACT	1																																																																																																																																																																																										1
CCAGC	4																																																																																																																																																																																										4
CCATC	2																																																																																																																																																																																										2
CCCAC	4	2																																																																																																																																																																																									6
CCCAG		1																																																																																																																																																																																									1
CCCAT	1	1																																																																																																																																																																																									2
CCCCA	18																																																																																																																																																																																										18
CCCCG	2																																																																																																																																																																																										2
CCCCT	38	8	2	1																																																																																																																																																																																							49
CCCGC	3	1																																																																																																																																																																																									4
CCCGG	1																																																																																																																																																																																										1
CCCTA	1																																																																																																																																																																																										1
CCCTC	30	5	1	1																																																																																																																																																																																							37
CCCTG	2		2																																																																																																																																																																																								4
CCCTT	10	1																																																																																																																																																																																									11
CCGCC	2																																																																																																																																																																																										2
CCGTG	1																																																																																																																																																																																										1
CCTCA	3		1																																																																																																																																																																																								4
CCTCC	15	3	1																																																																																																																																																																																								19
CCTCT	5	2																																																																																																																																																																																									7
CCTGC	2																																																																																																																																																																																										2
CCTTC	2	1																																																																																																																																																																																									3
CCTTG	1																																																																																																																																																																																										1
CCTTT	1																																																																																																																																																																																										1
CGAAG	2																																																																																																																																																																																										2
CGACG	1																																																																																																																																																																																										1
CGCAA	1																																																																																																																																																																																										1
CGCAC		1																																																																																																																																																																																									1
CGCAG	4																																																																																																																																																																																										4
CGCAT	1																																																																																																																																																																																										1
CGCCA	1																																																																																																																																																																																										1
CGCCC	1																																																																																																																																																																																										1
CGCCG	2																																																																																																																																																																																										2
CGCGA	1																																																																																																																																																																																										1
CGCGC	1																																																																																																																																																																																										1
CGCTC	3																																																																																																																																																																																										3
CGCTG	2		1																																																																																																																																																																																								3
CGGCA	1																																																																																																																																																																																										1
CGGCC	1																																																																																																																																																																																										1
CGGCG	1																																																																																																																																																																																										1
CGTCA	1																																																																																																																																																																																										1
CGTCT		1																																																																																																																																																																																									1
CGTGT	1																																																																																																																																																																																										1
CTCAC		1																																																																																																																																																																																									1
CTCCA	1																																																																																																																																																																																										1
CTCCC	17	1																																																																																																																																																																																									18
CTCCT	5	2																																																																																																																																																																																									7
CTCGG	1																																																																																																																																																																																										1
CTCGT			1																																																																																																																																																																																								1
CTCTC	7	2																																																																																																																																																																																									9
CTCTG	1																																																																																																																																																																																										1
CTCTT	1																																																																																																																																																																																										1
CTGCA	1																																																																																																																																																																																										1
CTGCC	1																																																																																																																																																																																										1
CTGCT	2																																																																																																																																																																																										2
CTGTC	1																																																																																																																																																																																										1
CTGTG	1																																																																																																																																																																																										1
CTTCA	1																																																																																																																																																																																										1
CTTCC	2		1																																																																																																																																																																																								3
CTTCT	2																																																																																																																																																																																										2
CTTGG	2	1																																																																																																																																																																																									3
CTTTC	4																																																																																																																																																																																										4
CTTTG	2																																																																																																																																																																																										2
GAAAA	1																																																																																																																																																																																										1
GAAAG	2																																																																																																																																																																																										2
GAACG	1																																																																																																																																																																																										1
GAAGG	1	1																																																																																																																																																																																									2
GAGAC	1																																																																																																																																																																																										1
GAGAG	7																																																																																																																																																																																										7
GAGCA	1																																																																																																																																																																																										1
GAGCC	2																																																																																																																																																																																										2
GAGCT	1		1																																																																																																																																																																																								2
GAGGA	4																																																																																																																																																																																										4
GAGGC	2																																																																																																																																																																																										2
GAGGG	18	3																																																																																																																																																																																									21
GAGGT	9																																																																																																																																																																																										9
GATGG	2																																																																																																																																																																																										2
GCAAC	2																																																																																																																																																																																										2
GCAAG	1																																																																																																																																																																																										1
GCACA	1																																																																																																																																																																																										1
GCACT	1																																																																																																																																																																																										1
GCAGA	3																																																																																																																																																																																										3
GCAGC	2																																																																																																																																																																																										2
GCCCC	2																																																																																																																																																																																										2
GCCGA	1																																																																																																																																																																																										1
GCCTC	1																																																																																																																																																																																										1
GCGAC	1																																																																																																																																																																																										1
GCGAG	1	1																																																																																																																																																																																									2
GCGCA	1																																																																																																																																																																																										1
GCGCG	2																																																																																																																																																																																										2
GCGCT	1																																																																																																																																																																																										1
GCGGC	2																																																																																																																																																																																										2
GCGGG	2																																																																																																																																																																																										2
GCGTG	1																																																																																																																																																																																										1
GCTCT	1																																																																																																																																																																																										1
GCTGC	1																																																																																																																																																																																										1
GCTGT				1																																																																																																																																																																																							1
GCTTG	1																																																																																																																																																																																										1
GGAAA	1																																																																																																																																																																																										1
GGAAG	2																																																																																																																																																																																										2
GGAGA	3	1																																																																																																																																																																																									4
GGAGG	7	2						1																																																																																																																																																																																			10
GGAGT	1																																																																																																																																																																																										1
GGATA	1																																																																																																																																																																																										1
GGCAA	1																																																																																																																																																																																										1
GGCCG	4																																																																																																																																																																																										4
GGCGC	2																																																																																																																																																																																										2
GGCGG	1																																																																																																																																																																																										1
GGCGT	1																																																																																																																																																																																										1
GGCTA	1																																																																																																																																																																																										1
GGCTG	1																																																																																																																																																																																										1
GGGAG	22			1																																																																																																																																																																																							23
GGGAT	2																																																																																																																																																																																										2
GGGCG	4	1																																																																																																																																																																																									5
GGGCT	3																																																																																																																																																																																										3
GGGGA	25	11	2																																																																																																																																																																																								38
GGGGC	7																																																																																																																																																																																										7
GGGGT	23	2																																																																																																																																																																																									25
GGGTC	1																																																																																																																																																																																										1
GGGTG	10	1																																																																																																																																																																																									11
GGGTT	3																																																																																																																																																																																										3
GGTGA	5	1		1																																																																																																																																																																																							7
GGTGC	1																																																																																																																																																																																										1
GGTGG	7																																																																																																																																																																																										7
GGTGT	2				1																																																																																																																																																																																						3
GGTTG	1																																																																																																																																																																																										1
GTAGG	1																																																																																																																																																																																										1
GTCGT	1																																																																																																																																																																																										1
GTCTC		1																																																																																																																																																																																									1
GTGAG	2																																																																																																																																																																																										2
GTGCA	1																																																																																																																																																																																										1
GTGCT	1																																																																																																																																																																																										1
GTGGA	1																																																																																																																																																																																										1
GTGGC	1																																																																																																																																																																																										1
GTGGG	4																																																																																																																																																																																										4
GTGGT	2																																																																																																																																																																																										2
GTGTG	2																																																																																																																																																																																										2
GTGTT	1																																																																																																																																																																																										1
GTTGT	1																																																																																																																																																																																										1
GTTTC	1																																																																																																																																																																																										1
GTTTT	6																																																																																																																																																																																										6
TAACC	1																																																																																																																																																																																										1
TACCC	1																																																																																																																																																																																										1
TACTG	2																																																																																																																																																																																										2
TAGCA	1																																																																																																																																																																																										1
TAGGG	5																																																																																																																																																																																										5
TATAT	4											1																																																																																																																																																																															5
TATTA	1								1																																																																																																																																																																																		2
TATTT	1																																																																																																																																																																																										1
TCACC	3																																																																																																																																																																																										3
TCAGC	1																																																																																																																																																																																										1
TCCCC	9	2																																																																																																																																																																																									11
TCCCT	1		1		1																																																																																																																																																																																						3
TCCGC	1																																																																																																																																																																																										1
TCCTC	3																																																																																																																																																																																										3
TCCTT		1																																																																																																																																																																																									1
TCGCC	3																																																																																																																																																																																										3
TCGTC			1																																																																																																																																																																																								1
TCTCC	3																																																																																																																																																																																										3
TCTCT	4																																																																																																																																																																																										4
TCTGC	1																																																																																																																																																																																										1
TCTGT	1																																																																																																																																																																																										1
TCTTG	1																																																																																																																																																																																										1
TCTTT	3																																																																																																																																																																																										3
TGAGG	3																																																																																																																																																																																										3
TGCAC	1																																																																																																																																																																																										1
TGCCA	2																																																																																																																																																																																										2
TGCCG	3																																																																																																																																																																																										3
TGCGC	1																																																																																																																																																																																										1
TGCGG	1																																																																																																																																																																																										1
TGCTC	2																																																																																																																																																																																										2
TGCTG	1	1																																																																																																																																																																																									2
TGGGG	7																																																																																																																																																																																										7
TGGTG	1	2																																																																																																																																																																																									3
TGTCT	1																																																																																																																																																																																										1
TGTGC	2																																																																																																																																																																																										2
TGTGT	1																																																																																																																																																																																										1
TGTTT	3																																																																																																																																																																																										3
TTCCC	2								1																																																																																																																																																																																		3
TTCCT	2																																																																																																																																																																																										2
TTCGC	1																																																																																																																																																																																										1
TTGGC	1																																																																																																																																																																																										1
TTGGG	1																																																																																																																																																																																										1
TTGTG	1																																																																																																																																																																																										1
TTGTT	5																																																																																																																																																																																										5
TTTCC	4																																																																																																																																																																																										4
TTTCG	1																																																																																																																																																																																										1
TTTGC	1																																																																																																																																																																																										1
TTTGT	4																																																																																																																																																																																										4
TTTTA	1																																																																																																																																																																																										1
TTTTC	1																																																																																																																																																																																										1
TTTTG	5																																																																																																																																																																																										5
AAAAAC	1																																																																																																																																																																																										1
AAACCT		1																																																																																																																																																																																									1
AAACGA	1																																																																																																																																																																																										1
AAATGA	2																																																																																																																																																																																										2
AACACA	1																																																																																																																																																																																										1
AACAGC	1																																																																																																																																																																																										1
AACATG	1																																																																																																																																																																																										1
AACCCT	58	41	37	39	36	27	15	20	13	8	11	6	6	2	2	1	1	2		1	1							1																																																																																																																																																															328
AAGAAA	1																																																																																																																																																																																										1
AAGCAC	1																																																																																																																																																																																										1
AAGCCG			1																																																																																																																																																																																								1
AAGGAG	1																																																																																																																																																																																										1
AAGGGG	1																																																																																																																																																																																										1
AATATA	1																																																																																																																																																																																										1
ACACAA	1																																																																																																																																																																																										1
ACACAG	3	1																																																																																																																																																																																									4
ACACAT	6	2																																																																																																																																																																																									8
ACACCC		1																																																																																																																																																																																									1
ACACCG	1																																																																																																																																																																																										1
ACACGC	14	3																																																																	1																																																																																																																								18
ACACGT			1																																																																																																																																																																																								1
ACAGAC	1	1																																																																																																																																																																																									2
ACATAC	1	1																																																																																																																																																																																									2
ACATAT	1	1																																																																																																																																																																																									2
ACATGC		1																																																																																																																																																																																									1
ACCACG		1																																																																																																																																																																																									1
ACCATC				1																																																																																																																																																																																							1
ACCCAA	1																																																																																																																																																																																										1
ACCCAC	1																																																																																																																																																																																										1
ACCCCC	1																																																																																																																																																																																										1
ACCCGT				1																																																																																																																																																																																							1
ACCCTA	526	270	186	103	53	42	25	20	15	8	4	1	3	2	1		1	1																																																																																																																																																																									1261
ACCCTC	246	108	40	28	15	8	7	1	3																																																																																																																																																																																		456
ACCTTG	1																																																																																																																																																																																										1
ACGATG	1																																																																																																																																																																																										1
ACGCAC	6	2	2						1																																																																																																																																																																																		11
ACGCCG	1																																																																																																																																																																																										1
ACGCGC	1																																																																																																																																																																																										1
ACGTGC	6																																																																																																																																																																																										6
ACTTCG	1																																																																																																																																																																																										1
AGAAAA	1																																																																																																																																																																																										1
AGACAC	1																																																																																																																																																																																										1
AGAGAC	1																																																																																																																																																																																										1
AGAGCG	1																																																																																																																																																																																										1
AGAGGC		1																																																																																																																																																																																									1
AGAGGG		1			1																																																																																																																																																																																						2
AGCACC	1																																																																																																																																																																																										1
AGCCGC	1																																																																																																																																																																																										1
AGCCGG	1																																																																																																																																																																																										1
AGCGCG	1																																																																																																																																																																																										1
AGCGGC	2																																																																																																																																																																																										2
AGCGTC	1																																																																																																																																																																																										1
AGGAAC	1																																																																																																																																																																																										1
AGGACG	2																																																																																																																																																																																										2
AGGCAC	1																																																																																																																																																																																										1
AGGCAG	1																																																																																																																																																																																										1
AGGCGG	1																																																																																																																																																																																										1
AGGCTG	1																																																																																																																																																																																										1
AGGGAG	3																																																																																																																																																																																										3
AGGGGA	2																																																																																																																																																																																										2
AGGGGG	4																																																																																																																																																																																										4
AGGGTG	340	144	58	47	12	8	9	3	4	2			2	1																																																																																																																																																																													630
AGGGTT	424	243	138	83	56	45	27	31	14	8	7	4	4	3	2	3			1																																																																																																																																																																								1093
AGTAGC	1																																																																																																																																																																																										1
AGTCGC	1																																																																																																																																																																																										1
AGTGCA	1																																																																																																																																																																																										1
AGTGGC	1	1																																																																																																																																																																																									2
ATACAA	1																																																																																																																																																																																										1
ATACAT	2			1																																																																																																																																																																																							3
ATATAC	2	2			1					1																																																																																																																																																																																	6
ATATAG	1																																																																																																																																																																																										1
ATATGT	1																																																																																																																																																																																										1
ATGGAG	1																																																																																																																																																																																										1
ATGGCC	1																																																																																																																																																																																										1
ATGGGA	1																																																																																																																																																																																										1
ATGGGT	1																																																																																																																																																																																										1
ATGGTG	1																																																																																																																																																																																										1
ATGTAT	115	25																																																																																																																																																																																									140
ATGTGC	1																																																																																																																																																																																										1
ATGTGT	4																																																																																																																																																																																										4
ATTTTT	2																																																																																																																																																																																										2
CAAAAA	1																																																																																																																																																																																										1
CAAGGC	1																																																																																																																																																																																										1
CACACC	7																																																																																																																																																																																										7
CACACG	29	8	3		2		1			1						1																																																																																																																																																																											45
CACAGA	1																																																																																																																																																																																										1
CACATA	1	1																																																																																																																																																																																									2
CACATG		3	1																																																																																																																																																																																								4
CACCAA	1																																																																																																																																																																																										1
CACCAT	2																																																																																																																																																																																										2
CACCCA	6	1	1																																																																																																																																																																																								8
CACCCC	1																																																																																																																																																																																										1
CACCCT	98	37	14	9	5	1		1																																																																																																																																																																																			165
CACCGC	3																																																																																																																																																																																										3
CACCTA	1																																																																																																																																																																																										1
CACGCA	17	2	1		1													1	1																1										1																																																																																																																																														25
CACGCG	3																																																																																																																																																																																										3
CACTCG	1																																																																																																																																																																																										1
CACTCT		1																																																																																																																																																																																									1
CAGACA			1																																																																																																																																																																																								1
CAGCAA	3																																																																																																																																																																																										3
CAGCAC	3																																																																																																																																																																																										3
CAGCCA	1																																																																																																																																																																																										1
CAGCCG	1																																																																																																																																																																																										1
CAGCGA	2																																																																																																																																																																																										2
CAGCTC	1																																																																																																																																																																																										1
CAGGAG	1																																																																																																																																																																																										1
CAGGCA	1		1																																																																																																																																																																																								2
CAGGCG	3																																																																																																																																																																																										3
CAGTGA		1																																																																																																																																																																																									1
CATACA	2	1																																																																																																																																																																																									3
CATCAC	1																																																																																																																																																																																										1
CATCCT	2																																																																																																																																																																																										2
CATGCA	1																																																																																																																																																																																										1
CCACCC	1																																																																																																																																																																																										1
CCACCG	1																																																																																																																																																																																										1
CCACGA	3																																																																																																																																																																																										3
CCACTA	1																																																																																																																																																																																										1
CCACTC					1																																																																																																																																																																																						1
CCACTT	1																																																																																																																																																																																										1
CCAGCA	3																																																																																																																																																																																										3
CCATCC	1																																																																																																																																																																																										1
CCATCT	1																																																																																																																																																																																										1
CCATGG	1																																																																																																																																																																																										1
CCATTC	1			1																																																																																																																																																																																							2
CCCACA	2																																																																																																																																																																																										2
CCCACC	1																																																																																																																																																																																										1
CCCAGC	1																																																																																																																																																																																										1
CCCCAA	1																																																																																																																																																																																										1
CCCCAC	1																																																																																																																																																																																										1
CCCCCA	11																																																																																																																																																																																										11
CCCCCT	12	1	1																																																																																																																																																																																								14
CCCCGC	1																																																																																																																																																																																										1
CCCCTC	5	1		2																																																																																																																																																																																							8
CCCGCA	32	1					1																																																																																																																																																																																				34
CCCGCC	1																																																																																																																																																																																										1
CCCGCT	1																																																																																																																																																																																										1
CCCTAA	31	12	7	7	8	1	3	1	2					1	1																																																																																																																																																																												74
CCCTAG	1																																																																																																																																																																																										1
CCCTAT			1																																																																																																																																																																																								1
CCCTCA	19	9	3	1		1																																																																																																																																																																																					33
CCCTCC	7	2			1																																																																																																																																																																																						10
CCCTCT	5	2																																																																																																																																																																																									7
CCCTTA	1																																																																																																																																																																																										1
CCGACA	2																																																																																																																																																																																										2
CCGCAC	4																																																																																																																																																																																										4
CCGCCA	7																																																																																																																																																																																										7
CCGCCT	1																																																																																																																																																																																										1
CCGCTG	1	1																																																																																																																																																																																									2
CCGGCA	1																																																																																																																																																																																										1
CCGGCG	1																																																																																																																																																																																										1
CCGTAA	8	2		1	1																																																																																																																																																																																						12
CCGTCT		1																																																																																																																																																																																									1
CCTAAC	13	13	4	1	1	2		3										1																																																																																																																																																																									38
CCTCAC	7	1	1	3																																																																																																																																																																																							12
CCTCCC	6																																																																																																																																																																																										6
CCTCGC	1																																																																																																																																																																																										1
CCTCGT	1																																																																																																																																																																																										1
CCTCTC	4																																																																																																																																																																																										4
CCTCTT		1																																																																																																																																																																																									1
CCTGCA	1																																																																																																																																																																																										1
CCTGGC	2																																																																																																																																																																																										2
CCTTCA		1																																																																																																																																																																																									1
CCTTCC	1																																																																																																																																																																																										1
CCTTCT	1																																																																																																																																																																																										1
CGACAG	1																																																																																																																																																																																										1
CGAGAG	1																																																																																																																																																																																										1
CGAGGA	1																																																																																																																																																																																										1
CGAGGC		4																																																																																																																																																																																									4
CGAGGG	1																																																																																																																																																																																										1
CGCACA	7	1	2							1																																																																																																																																																																																	11
CGCACG	2																																																																																																																																																																																										2
CGCAGC	3																																																																																																																																																																																										3
CGCCAC	2																																																																																																																																																																																										2
CGCCCA		1																																																																																																																																																																																									1
CGCCGG	1																																																																																																																																																																																										1
CGCCGT	1																																																																																																																																																																																										1
CGCCTC	2																																																																																																																																																																																										2
CGCGAC	1																																																																																																																																																																																										1
CGCGCA	1																																																																																																																																																																																										1
CGCGTG	2																																																																																																																																																																																										2
CGCTCT	3																																																																																																																																																																																										3
CGCTGC	3																																																																																																																																																																																										3
CGGAGA	1																																																																																																																																																																																										1
CGGCAC	1																																																																																																																																																																																										1
CGGCAG	1	1																																																																																																																																																																																									2
CGGCCA	2																																																																																																																																																																																										2
CGGCGA	1																																																																																																																																																																																										1
CGGCGC	4																																																																																																																																																																																										4
CGGCGT	2																																																																																																																																																																																										2
CGGCTG	1	1																																																																																																																																																																																									2
CGGTGA	1																																																																																																																																																																																										1
CGTAAC				1																																																																																																																																																																																							1
CGTCAT		1																																																																																																																																																																																									1
CGTCCT	2																																																																																																																																																																																										2
CGTCGC	3		1																																																																																																																																																																																								4
CGTCGG	3																																																																																																																																																																																										3
CGTGGC	1																																																																																																																																																																																										1
CGTGTG	8	1																																																																																																																																																																																									9
CGTGTT	1																																																																																																																																																																																										1
CGTTGG	1																																																																																																																																																																																										1
CTAACC	17	8	7	5	2		1			1																																																																																																																																																																																	41
CTCACC	1	3		1		1																																																																																																																																																																																					6
CTCCAC	1																																																																																																																																																																																										1
CTCCCA		1																																																																																																																																																																																									1
CTCCCC	6																																																																																																																																																																																										6
CTCCCT	1	1		1																																																																																																																																																																																							3
CTCCTG	1																																																																																																																																																																																										1
CTCGAG	1																																																																																																																																																																																										1
CTCGCG	1																																																																																																																																																																																										1
CTCGCT	3																																																																																																																																																																																										3
CTCGTC	1		1																																																																																																																																																																																								2
CTCTCA	1																																																																																																																																																																																										1
CTCTCC	5																																																																																																																																																																																										5
CTCTCG	2																																																																																																																																																																																										2
CTCTGC	1																																																																																																																																																																																										1
CTCTGT	2																																																																																																																																																																																										2
CTCTTC	1																																																																																																																																																																																										1
CTGAAC	1																																																																																																																																																																																										1
CTGACC			1																																																																																																																																																																																								1
CTGCCG	2																																																																																																																																																																																										2
CTGCCT	1																																																																																																																																																																																										1
CTGCGG	1																																																																																																																																																																																										1
CTGGCC		1																																																																																																																																																																																									1
CTGGGG	1																																																																																																																																																																																										1
CTGTCG	1																																																																																																																																																																																										1
CTGTCT	1																																																																																																																																																																																										1
CTTCCC	1																																																																																																																																																																																										1
CTTCCT	2																																																																																																																																																																																										2
CTTGTG	1																																																																																																																																																																																										1
CTTTCC	1																																																																																																																																																																																										1
GAAGAG	3																																																																																																																																																																																										3
GAAGGG	3																																																																																																																																																																																										3
GACACA	2																																																																																																																																																																																										2
GACAGC	1																																																																																																																																																																																										1
GACCCT		1																																																																																																																																																																																									1
GAGAGC	3																																																																																																																																																																																										3
GAGAGG	6	2	2		1																																																																																																																																																																																						11
GAGGAA	1																																																																																																																																																																																										1
GAGGAC	2																																																																																																																																																																																										2
GAGGCG	1																																																																																																																																																																																										1
GAGGGA	2	1				1																																																																																																																																																																																					4
GAGGGC	1																																																																																																																																																																																										1
GAGGGG	1	3																																																																																																																																																																																									4
GAGGGT	26	16	5	2	1	2																																																																																																																																																																																					52
GAGTGT	1																																																																																																																																																																																										1
GATGGT	2																																																																																																																																																																																										2
GCACAA	1																																																																																																																																																																																										1
GCACAC	9	24																																																																																																																																																																																									33
GCACCA	1																																																																																																																																																																																										1
GCACCT	1																																																																																																																																																																																										1
GCAGCC	2																																																																																																																																																																																										2
GCAGCG	1	1																																																																																																																																																																																									2
GCAGTC	1																																																																																																																																																																																										1
GCATAC	1																																																																																																																																																																																										1
GCCACC	2																																																																																																																																																																																										2
GCCCTC	1																																																																																																																																																																																										1
GCCCTG	2																																																																																																																																																																																										2
GCCGAC	1																																																																																																																																																																																										1
GCCGCG	1																																																																																																																																																																																										1
GCCGCT	16	3																																																																																																																																																																																									19
GCCGGC	1																																																																																																																																																																																										1
GCCGTC	1																																																																																																																																																																																										1
GCCTGC	1																																																																																																																																																																																										1
GCGACG	1																																																																																																																																																																																										1
GCGATC	1																																																																																																																																																																																										1
GCGCCG	1																																																																																																																																																																																										1
GCGCCT	1																																																																																																																																																																																										1
GCGGAG	2																																																																																																																																																																																										2
GCGGCA	3	1																																																																																																																																																																																									4
GCGGTG	4	1																																																																																																																																																																																									5
GCGTCC	1																																																																																																																																																																																										1
GCGTGA	1																																																																																																																																																																																										1
GCGTGG	1																																																																																																																																																																																										1
GCGTGT	15	2	3																																																																																																																																																																																								20
GCTCCT	1																																																																																																																																																																																										1
GCTGAG			1																																																																																																																																																																																								1
GCTGCC	2																																																																																																																																																																																										2
GCTGCG	4	1																																																																																																																																																																																									5
GCTGTA		1																																																																																																																																																																																									1
GGAAAA	1																																																																																																																																																																																										1
GGAAGG	3																																																																																																																																																																																										3
GGACGA	3																																																																																																																																																																																										3
GGACTG	1																																																																																																																																																																																										1
GGAGAG	2																																																																																																																																																																																										2
GGAGGC	5																																																																																																																																																																																										5
GGAGGG	5																																																																																																																																																																																										5
GGCAAG	1																																																																																																																																																																																										1
GGCACA		1																																																																																																																																																																																									1
GGCAGC	3			1																																																																																																																																																																																							4
GGCAGT	1																																																																																																																																																																																										1
GGCCAC	1	1																																																																																																																																																																																									2
GGCCCT				1	1																																																																																																																																																																																						2
GGCCGC		1																																																																																																																																																																																									1
GGCGAG	3	3	1																																																																																																																																																																																								7
GGCGAT	1																																																																																																																																																																																										1
GGCGCC	3																																																																																																																																																																																										3
GGCGGA	1		1																																																																																																																																																																																								2
GGCGGT	8		1																																																																																																																																																																																								9
GGCTGC	2																																																																																																																																																																																										2
GGCTGG	1																																																																																																																																																																																										1
GGGAAG	1																																																																																																																																																																																										1
GGGAGA	3	1																																																																																																																																																																																									4
GGGAGG	6																																																																																																																																																																																										6
GGGCGG	1																																																																																																																																																																																										1
GGGCTA	1																																																																																																																																																																																										1
GGGGAA	1																																																																																																																																																																																										1
GGGGAG	3	1																																																																																																																																																																																									4
GGGGGA	8																																																																																																																																																																																										8
GGGGGT	1	1																																																																																																																																																																																									2
GGGGTG	2	1																																																																																																																																																																																									3
GGGGTT	1																																																																																																																																																																																										1
GGGTGA	18	8	4	1																																																																																																																																																																																							31
GGGTGG	2																																																																																																																																																																																										2
GGGTGT	2	2																																																																																																																																																																																									4
GGGTTA	39	32	12	9	10	5			2			1								1																																																																																																																																																																							111
GGTGAG	18	5	5																																																																																																																																																																																								28
GGTGCA	1																																																																																																																																																																																										1
GGTGCC	1																																																																																																																																																																																										1
GGTGGC	3																																																																																																																																																																																										3
GGTGGG	2																																																																																																																																																																																										2
GGTGTG	1																																																																																																																																																																																										1
GGTTAC	3	2	2																																																																																																																																																																																								7
GGTTAG	105	61	58	39	21	18	17	4	5	8	9	6	8	3	2	1		3	1	1		2																																																																																																																																																																					372
GGTTCG	1																																																																																																																																																																																										1
GTAACC	1																																																																																																																																																																																										1
GTACGA	1																																																																																																																																																																																										1
GTATGT	2																																																																																																																																																																																										2
GTCGCC	3																																																																																																																																																																																										3
GTCTGT	1		1																																																																																																																																																																																								2
GTGAGG	2	2																																																																																																																																																																																									4
GTGCAT	1																																																																																																																																																																																										1
GTGCCC		1																																																																																																																																																																																									1
GTGCGG	89	7		2																																																																																																																																																																																							98
GTGCGT	12	3																																																																																																																																																																																									15
GTGCTG	1																																																																																																																																																																																										1
GTGGAG	1																																																																																																																																																																																										1
GTGGCC	1																																																																																																																																																																																										1
GTGGCG	1																																																																																																																																																																																										1
GTGGGG	1																																																																																																																																																																																										1
GTGGGT	1		1																																																																																																																																																																																								2
GTGGTC	1																																																																																																																																																																																										1
GTGGTT	2																																																																																																																																																																																										2
GTGTAT	3																																																																																																																																																																																										3
GTGTCT	1																																																																																																																																																																																										1
GTGTGC	23	8	2	1																																																																																																																																																																																							34
GTGTGG	5	5	1																																																																																																																																																																																								11
GTTAGG	1	2	1					1																																																																																																																																																																																			5
GTTTGT	1																																																																																																																																																																																										1
GTTTTT	1																																																																																																																																																																																										1
TAAAAA	1																																																																																																																																																																																										1
TAACCC	36	18	9	9	8	2		4	1		1	1	1											1																																																																																																																																																																			91
TAACCG		1		1		1																																																																																																																																																																																					3
TACGGC	1	1																																																																																																																																																																																									2
TACGGT	1																																																																																																																																																																																										1
TACGTG	1																																																																																																																																																																																										1
TAGGGT	139	79	44	32	21	9	7	4	1	3	7	1	1		1		1	1			1																																																																																																																																																																						352
TAGGTT	1																																																																																																																																																																																										1
TAGTGG	1																																																																																																																																																																																										1
TATATG	4	2																																																																																																																																																																																									6
TATGCA		1																																																																																																																																																																																									1
TATGGT	2																																																																																																																																																																																										2
TATGTA	34	26																																																																																																																																																																																									60
TATGTG				1																																																																																																																																																																																							1
TATTTT	1																																																																																																																																																																																										1
TCACCC	4	2	1	1																																																																																																																																																																																							8
TCATCG		1																																																																																																																																																																																									1
TCCAGC	1																																																																																																																																																																																										1
TCCCCC	7	1	2																																																																																																																																																																																								10
TCCCTC	1	1																																																																																																																																																																																									2
TCCGCA		4																																																																																																																																																																																									4
TCCGCC	1																																																																																																																																																																																										1
TCCTCG	2																																																																																																																																																																																										2
TCCTCT	2																																																																																																																																																																																										2
TCGAGC	1																																																																																																																																																																																										1
TCGCAG	1																																																																																																																																																																																										1
TCGCCC	1																																																																																																																																																																																										1
TCGCCG	1																																																																																																																																																																																										1
TCGGCA	1																																																																																																																																																																																										1
TCGTCC	1																																																																																																																																																																																										1
TCTCAC	1																																																																																																																																																																																										1
TCTCCC	3			1																																																																																																																																																																																							4
TCTCGC	1																																																																																																																																																																																										1
TCTCTG	2				1																																																																																																																																																																																						3
TCTGTG	3	1																																																																																																																																																																																									4
TGAGGC	1																																																																																																																																																																																										1
TGAGGG	4	2	1																																																																																																																																																																																								7
TGAGTG	1																																																																																																																																																																																										1
TGCATA	1																																																																																																																																																																																										1
TGCCGG	1																																																																																																																																																																																										1
TGCCTC	1																																																																																																																																																																																										1
TGCCTG			1																																																																																																																																																																																								1
TGCGAA	1																																																																																																																																																																																										1
TGCGCG	1																																																																																																																																																																																										1
TGCGGA		14																																																																																																																																																																																									14
TGCGGC	1		1																																																																																																																																																																																								2
TGCGGG		1																																																																																																																																																																																									1
TGCGTC	2																																																																																																																																																																																										2
TGCGTG	8	2			1																																																																																																																																																																																						11
TGCTGG	3																																																																																																																																																																																										3
TGCTGT	1																																																																																																																																																																																										1
TGGCCC	1																																																																																																																																																																																										1
TGGCGC	1																																																																																																																																																																																										1
TGGCGG	1																																																																																																																																																																																										1
TGGCTG	1	15																																																																																																																																																																																									16
TGGGCT	1																																																																																																																																																																																										1
TGGGGG	1																																																																																																																																																																																										1
TGGTGA	1																																																																																																																																																																																										1
TGTACG	1																																																																																																																																																																																										1
TGTATA	2																																																																																																																																																																																										2
TGTATG	1																																																																																																																																																																																										1
TGTCGT	1																																																																																																																																																																																										1
TGTCTG	2																																																																																																																																																																																										2
TGTGCA	2																																																																																																																																																																																										2
TGTGCC	1																																																																																																																																																																																										1
TGTGCG	7	2	1																																																																																																																																																																																								10
TGTGGA	1																																																																																																																																																																																										1
TGTGGG	1	1																																																																																																																																																																																									2
TGTGTA	3																																																																																																																																																																																										3
TGTGTC	3		1																																																																																																																																																																																								4
TGTTGC	1																																																																																																																																																																																										1
TGTTGG		1																																																																																																																																																																																									1
TGTTTG	2																																																																																																																																																																																										2
TTAGGG	9	1	2	1																																																																																																																																																																																							13
TTCTTT	1																																																																																																																																																																																										1
TTTCCC	1																																																																																																																																																																																										1
TTTCCT	1																																																																																																																																																																																										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	128	129	130	131	132	133	134	135	136	137	138	139	140	141	142	143	144	145	146	147	148	149	150	151	152	153	154	155	156	157	158	159	160	161	162	163	164	165	166	167	168	169	170	171	172	173	174	175	176	177	178	179	180	181	182	183	184	185	186	187	188	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1	1	1	3					1		4				1				1		1		1	2								1	2									1																1		1			1													1														1									1				1																					1																																						1						1	31
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3	4	1			2				2	1		1	1				1					1	2				1		1							1			1		1						1																																																																					1																																																					26
AC/GT	-	-	-	2388	1744	1440	1069	625	481	319	230	179	117	81	59	36	26	28	13	10	5	2	4		5	4		2		2		2																											1					1																			1																																																																1																																								8875
AG/CT	-	-	-	1099	538	191	57	6		1																																																																																																																																																																																	1892
AT/AT	-	-	-	276	399	346	200	68	37	10	3	1																																																																																																																																																																															1340
CG/CG	-	-	-	124	20	1																																																																																																																																																																																					145
AAC/GTT	-	-	30	7	2	2	1																																																																																																																																																																																				42
AAG/CTT	-	-	4																																																																																																																																																																																								4
AAT/ATT	-	-	21	1																																																																																																																																																																																							22
ACC/GGT	-	-	305	138	47	18	5	1	3	2	1					1																																																																																																																																																																											521
ACG/CGT	-	-	77	22	4	2																																																																																																																																																																																					105
ACT/AGT	-	-	3						1																																																																																																																																																																																		4
AGC/CTG	-	-	505	274	106	41	22	4	5	1																																																																																																																																																																																	958
AGG/CCT	-	-	162	53	25	12	5	1	1	1				1									1																																																																																																																																																																				262
ATC/ATG	-	-	13			2																																																																																																																																																																																					15
CCG/CGG	-	-	255	81	17	7	1	2	3																																																																																																																																																																																		366
AAAC/GTTT	-	11	3																																																																																																																																																																																								14
AAAG/CTTT	-	2																																																																																																																																																																																									2
AAAT/ATTT	-	5																																																																																																																																																																																									5
AACC/GGTT	-	5	2		1																																																																																																																																																																																						8
AAGC/CTTG	-	13	3	1																																																																																																																																																																																							17
AAGG/CCTT	-	8	4	1																																																																																																																																																																																							13
ACAG/CTGT	-	32	6	1	2																																																																																																																																																																																						41
ACAT/ATGT	-	18	3					1																																																																																																																																																																																			22
ACCC/GGGT	-	94	24	12	1																																																																																																																																																																																						131
ACCG/CGGT	-	5	1																																																																																																																																																																																								6
ACCT/AGGT	-	4	1																																																																																																																																																																																								5
ACGC/CGTG	-	128	24	4	1	1	1																																																																																																																																																																																				159
ACGG/CCGT	-	2	4	1																																																																																																																																																																																							7
ACTC/AGTG	-	6																																																																																																																																																																																									6
AGAT/ATCT	-	5	1																																																																																																																																																																																								6
AGCC/CTGG	-	4																																																																																																																																																																																									4
AGCG/CGCT	-	18	6																																																																																																																																																																																								24
AGGC/CCTG	-	22	2	2	1	1	1																																																																																																																																																																																				29
AGGG/CCCT	-	196	57	19	11	3		1				1				1																																																																																																																																																																											289
ATCC/ATGG	-	51	33	41	22	18	19	11	8	6	6		2	2	1		1					1																																																																																																																																																																					222
ATGC/ATGC	-	6	1																																																																																																																																																																																								7
CCCG/CGGG	-	16	1																																																																																																																																																																																								17
CCGG/CCGG	-	3		1																																																																																																																																																																																							4
AAAAC/GTTTT	48	1																																																																																																																																																																																									49
AAAAG/CTTTT	7																																																																																																																																																																																										7
AAAAT/ATTTT	5	1																																																																																																																																																																																									6
AAACC/GGTTT	1																																																																																																																																																																																										1
AAACG/CGTTT	3																																																																																																																																																																																										3
AAAGC/CTTTG	8																																																																																																																																																																																										8
AAAGG/CCTTT	18	1																																																																																																																																																																																									19
AACAC/GTGTT	10																																																																																																																																																																																										10
AACAG/CTGTT	1																																																																																																																																																																																										1
AACCC/GGGTT	7	2																																																																																																																																																																																									9
AACCT/AGGTT	2																																																																																																																																																																																										2
AACGC/CGTTG	3																																																																																																																																																																																										3
AACGG/CCGTT	1																																																																																																																																																																																										1
AAGAC/CTTGT	2																																																																																																																																																																																										2
AAGAG/CTCTT	9																																																																																																																																																																																										9
AAGCC/CTTGG	4	1																																																																																																																																																																																									5
AAGCG/CGCTT	3																																																																																																																																																																																										3
AAGGC/CCTTG	4																																																																																																																																																																																										4
AAGGG/CCCTT	29	8	2		1				1																																																																																																																																																																																		41
AAGTG/ACTTC	2																																																																																																																																																																																										2
AATAT/ATATT	8								1			1																																																																																																																																																																															10
AATGC/ATTGC	1																																																																																																																																																																																										1
AATTC/AATTG		1																																																																																																																																																																																									1
ACACC/GGTGT	11	3			1																																																																																																																																																																																						15
ACACG/CGTGT	2																																																																																																																																																																																										2
ACAGC/CTGTG	12	1		1																																																																																																																																																																																							14
ACAGG/CCTGT	1																																																																																																																																																																																										1
ACAGT/ACTGT	3			1																																																																																																																																																																																							4
ACCCC/GGGGT	88	6						1																																																																																																																																																																																			95
ACCCG/CGGGT	1	1																																																																																																																																																																																									2
ACCCT/AGGGT	35	3	1																																																																																																																																																																																								39
ACCGC/CGGTG	2	2																																																																																																																																																																																									4
ACCTC/AGGTG	32	6	2	1			1																																																																																																																																																																																				42
ACGAG/CGTCT	2	2	2																																																																																																																																																																																								6
ACGCC/CGTGG	7																																																																																																																																																																																										7
ACGCG/CGCGT	3																																																																																																																																																																																										3
ACGGC/CCGTG	7																																																																																																																																																																																										7
ACGTC/ACGTG	1																																																																																																																																																																																										1
ACTCC/AGTGG	5																																																																																																																																																																																										5
ACTGC/AGTGC	5																																																																																																																																																																																										5
AGAGC/CTCTG	13	1																																																																																																																																																																																									14
AGAGG/CCTCT	45	7	1																																																																																																																																																																																								53
AGCAT/ATGCT	1																																																																																																																																																																																										1
AGCCC/CTGGG	8	1																																																																																																																																																																																									9
AGCCG/CGGCT	4																																																																																																																																																																																										4
AGCCT/AGGCT	1																																																																																																																																																																																										1
AGCGC/CGCTG	13		1																																																																																																																																																																																								14
AGCGG/CCGCT	4																																																																																																																																																																																										4
AGCTC/AGCTG	3		1																																																																																																																																																																																								4
AGGAT/ATCCT	1																																																																																																																																																																																										1
AGGCG/CCTCG	7	1																																																																																																																																																																																									8
AGGGC/CCCTG	6		2																																																																																																																																																																																								8
AGGGG/CCCCT	194	37	6	3				1																																																																																																																																																																																			241
ATCCC/ATGGG	8	2																																																																																																																																																																																									10
ATCGC/ATGCG	1																																																																																																																																																																																										1
ATGCC/ATGGC	3																																																																																																																																																																																										3
CCCCG/CGGGG	24	2																																																																																																																																																																																									26
CCCGG/CCGGG	6																																																																																																																																																																																										6
CCGCG/CGCGG	10																																																																																																																																																																																										10
AAAAAC/GTTTTT	3																																																																																																																																																																																										3
AAAAAG/CTTTTT	3																																																																																																																																																																																										3
AAAAAT/ATTTTT	4																																																																																																																																																																																										4
AAAACG/CGTTTT	1																																																																																																																																																																																										1
AAAAGG/CCTTTT	2																																																																																																																																																																																										2
AAAATG/ATTTTC	2																																																																																																																																																																																										2
AAACAC/GTGTTT	5																																																																																																																																																																																										5
AAACCC/GGGTTT	1																																																																																																																																																																																										1
AAACCT/AGGTTT	1	1																																																																																																																																																																																									2
AAAGGG/CCCTTT	2																																																																																																																																																																																										2
AAATAC/ATTTGT	1																																																																																																																																																																																										1
AAATAT/ATATTT	1																																																																																																																																																																																										1
AACACC/GGTGTT	1	1																																																																																																																																																																																									2
AACACG/CGTGTT	1																																																																																																																																																																																										1
AACAGC/CTGTTG	6																																																																																																																																																																																										6
AACAGG/CCTGTT	1																																																																																																																																																																																										1
AACATG/ATGTTC	1																																																																																																																																																																																										1
AACCAC/GGTTGT	2																																																																																																																																																																																										2
AACCAT/ATGGTT	2																																																																																																																																																																																										2
AACCCC/GGGGTT	2																																																																																																																																																																																										2
AACCCG/CGGGTT	1																																																																																																																																																																																										1
AACCCT/AGGGTT	1398	780	505	328	216	151	95	88	53	36	39	20	23	11	9	5	3	8	2	3	2	2		1				1																																																																																																																																																															3779
AACCGT/ACGGTT	13	5	2	3	1	1																																																																																																																																																																																					25
AACCTG/AGGTTC	1																																																																																																																																																																																										1
AACGAC/CGTTGT	1																																																																																																																																																																																										1
AACGCC/CGTTGG	1																																																																																																																																																																																										1
AAGAGG/CCTCTT	9	1																																																																																																																																																																																									10
AAGCAC/CTTGTG	3																																																																																																																																																																																										3
AAGCCC/CTTGGG	1																																																																																																																																																																																										1
AAGCCG/CGGCTT			1																																																																																																																																																																																								1
AAGGAG/CCTTCT	2																																																																																																																																																																																										2
AAGGCC/CCTTGG	1																																																																																																																																																																																										1
AAGGGC/CCCTTG	1																																																																																																																																																																																										1
AAGGGG/CCCCTT	13																																																																																																																																																																																										13
AAGGGT/ACCCTT	1																																																																																																																																																																																										1
AAGGTC/ACCTTG	1																																																																																																																																																																																										1
AAGGTG/ACCTTC		1																																																																																																																																																																																									1
AAGTCG/ACTTCG	1																																																																																																																																																																																										1
AAGTGC/ACTTGC	1																																																																																																																																																																																										1
AAGTGG/ACTTCC	1																																																																																																																																																																																										1
AATGCG/ATTCGC	1																																																																																																																																																																																										1
AATGGG/ATTCCC	2			1																																																																																																																																																																																							3
ACACAG/CTGTGT	18	3	3																																																																																																																																																																																								24
ACACAT/ATGTGT	23	5		1																																																																																																																																																																																							29
ACACCC/GGGTGT	26	10	3																																																																																																																																																																																								39
ACACCG/CGGTGT	3																																																																																																																																																																																										3
ACACCT/AGGTGT	1																																																																																																																																																																																										1
ACACGC/CGTGTG	155	58	14	1	4		1		1	2						1		1	1																1										1																						1																																																																																																																								242
ACACGT/ACGTGT	2		1																																																																																																																																																																																								3
ACACTC/AGTGTG	2																																																																																																																																																																																										2
ACAGAG/CTCTGT	6				1																																																																																																																																																																																						7
ACAGCC/CTGTGG	2	15																																																																																																																																																																																									17
ACAGCG/CGCTGT	5																																																																																																																																																																																										5
ACAGCT/AGCTGT		1																																																																																																																																																																																									1
ACAGGC/CCTGTG	3	1	2																																																																																																																																																																																								6
ACAGTG/ACTGTC		1																																																																																																																																																																																									1
ACATAT/ATATGT	161	56		1	1					1																																																																																																																																																																																	220
ACATCC/ATGTGG	1																																																																																																																																																																																										1
ACATGC/ATGTGC	5	4	1																																																																																																																																																																																								10
ACCACG/CGTGGT	4	1																																																																																																																																																																																									5
ACCACT/AGTGGT	2																																																																																																																																																																																										2
ACCAGC/CTGGTG	12																																																																																																																																																																																										12
ACCATC/ATGGTG	7			1																																																																																																																																																																																							8
ACCCAT/ATGGGT	1																																																																																																																																																																																										1
ACCCCC/GGGGGT	25	2																																																																																																																																																																																									27
ACCCGC/CGGGTG	125	9		2			1																																																																																																																																																																																				137
ACCCGT/ACGGGT				1																																																																																																																																																																																							1
ACCCTC/AGGGTG	783	337	132	93	33	21	16	5	7	2			2	1																																																																																																																																																																													1432
ACCCTG/AGGGTC		1	1																																																																																																																																																																																								2
ACCGCC/CGGTGG	32	1	1																																																																																																																																																																																								34
ACCGCG/CGCGGT	1																																																																																																																																																																																										1
ACCGGC/CCGGTG	4																																																																																																																																																																																										4
ACCGTC/ACGGTG	1																																																																																																																																																																																										1
ACCTCC/AGGTGG	2																																																																																																																																																																																										2
ACCTGC/AGGTGC	3																																																																																																																																																																																										3
ACGAGG/CCTCGT	15		1																																																																																																																																																																																								16
ACGAGT/ACTCGT	1																																																																																																																																																																																										1
ACGATG/ATCGTC	1	2																																																																																																																																																																																									3
ACGCAG/CGTCTG	2																																																																																																																																																																																										2
ACGCAT/ATGCGT	1																																																																																																																																																																																										1
ACGCCC/CGTGGG	1	1																																																																																																																																																																																									2
ACGCCG/CGGCGT	7																																																																																																																																																																																										7
ACGCGC/CGCGTG	10																																																																																																																																																																																										10
ACGCGG/CCGCGT	1																																																																																																																																																																																										1
ACGCTC/AGCGTG	1																																																																																																																																																																																										1
ACGCTG/AGCGTC	1																																																																																																																																																																																										1
ACGGAG/CCGTCT	1	1																																																																																																																																																																																									2
ACGGCC/CCGTGG	5	1																																																																																																																																																																																									6
ACGGCG/CCGTCG	11		1																																																																																																																																																																																								12
ACGGCT/AGCCGT	1	1																																																																																																																																																																																									2
ACGGGC/CCCGTG		1																																																																																																																																																																																									1
ACGTGC/ACGTGC	6																																																																																																																																																																																										6
ACTCCC/AGTGGG		1			1																																																																																																																																																																																						2
ACTCGC/AGTGCG	1																																																																																																																																																																																										1
ACTCTC/AGAGTG	2	1																																																																																																																																																																																									3
ACTGCC/AGTGGC	2	1																																																																																																																																																																																									3
ACTGCG/AGTCGC	3																																																																																																																																																																																										3
ACTGCT/AGCAGT	1																																																																																																																																																																																										1
ACTGGG/AGTCCC	1																																																																																																																																																																																										1
AGAGCG/CGCTCT	14																																																																																																																																																																																										14
AGAGGC/CCTCTG	4	1																																																																																																																																																																																									5
AGAGGG/CCCTCT	35	9	2	2	2	1																																																																																																																																																																																					51
AGATAT/ATATCT	1																																																																																																																																																																																										1
AGATGG/ATCTCC	2																																																																																																																																																																																										2
AGCAGG/CCTGCT	3																																																																																																																																																																																										3
AGCCCC/CTGGGG	3																																																																																																																																																																																										3
AGCCCT/AGGGCT	2																																																																																																																																																																																										2
AGCCGC/CGGCTG	16	2	1																																																																																																																																																																																								19
AGCCGG/CCGGCT	1																																																																																																																																																																																										1
AGCCTC/AGGCTG	2		1																																																																																																																																																																																								3
AGCGCC/CGCTGG	1																																																																																																																																																																																										1
AGCGCG/CGCGCT	2																																																																																																																																																																																										2
AGCGGC/CCGCTG	34	7		1																																																																																																																																																																																							42
AGCGGG/CCCGCT	1																																																																																																																																																																																										1
AGCTCC/AGCTGG	2																																																																																																																																																																																										2
AGCTCG/AGCTCG	2																																																																																																																																																																																										2
AGGATG/ATCCTC	2																																																																																																																																																																																										2
AGGCCG/CCTCGG		4																																																																																																																																																																																									4
AGGCGC/CCTGCG	5																																																																																																																																																																																										5
AGGCGG/CCGCCT	14		1																																																																																																																																																																																								15
AGGGAT/ATCCCT			1																																																																																																																																																																																								1
AGGGCC/CCCTGG	5	1		1	1																																																																																																																																																																																						8
AGGGCG/CCCTCG	8	3	1																																																																																																																																																																																								12
AGGGGG/CCCCCT	70	9	3	2	1																																																																																																																																																																																						85
ATATGC/ATATGC	1	1																																																																																																																																																																																									2
ATCCCC/ATGGGG	1																																																																																																																																																																																										1
ATCCGC/ATGCGG		18																																																																																																																																																																																									18
ATCGCC/ATGGCG	1																																																																																																																																																																																										1
ATCGCG/ATCGCG	1																																																																																																																																																																																										1
ATCGGC/ATGCCG	1																																																																																																																																																																																										1
ATGGCC/ATGGCC	2																																																																																																																																																																																										2
CCCCCG/CGGGGG	3																																																																																																																																																																																										3
CCGCGG/CCGCGG	1	1																																																																																																																																																																																									2
CCGGCG/CCGGCG	11																																																																																																																																																																																										11
