Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_033557285.1/fasta/hub_GCA_033557285.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              18216
Total size of examined sequences (bp):           6148404
Total number of identified SSRs:                 905
Number of SSR containing sequences:              821
Number of sequences containing more than 1 SSR:  68
Number of SSRs present in compound formation:    36


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	82
3	127
4	77
5	569
6	49

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-							1	1
AC	-	-	-	1	1			1		1															4
AG	-	-	-	10	7	4	2	1																	24
AT	-	-	-	3	3																				6
CA	-	-	-	2		2					1														5
CG	-	-	-	1																					1
CT	-	-	-	3		2		2	1	1															9
GA	-	-	-	3	3	5	1	2	1	1															16
GC	-	-	-	1																					1
GT	-	-	-	1																					1
TA	-	-	-	3																					3
TC	-	-	-	6		1	1		1																9
TG	-	-	-	2	1																				3
AAC	-	-	2																						2
AAG	-	-	12		1		1																		14
AAT	-	-	5	2																					7
ACA	-	-		1																					1
AGA	-	-	6	1	2	1																			10
AGT	-	-				1																			1
ATA	-	-	3	1																					4
ATC	-	-	1	1																					2
ATG	-	-	1		1																				2
ATT	-	-	6	3																					9
CAA	-	-		1																					1
CAT	-	-	1	2																					3
CCA	-	-	1																						1
CCG	-	-	1																						1
CCT	-	-	1																						1
CGC	-	-				1																			1
CGT	-	-	2																						2
CTT	-	-	6																						6
GAA	-	-	19	8	1																				28
GAG	-	-			1																				1
GGA	-	-	1		1																				2
GGC	-	-	1																						1
GTA	-	-				1																			1
GTC	-	-	1																						1
TAA	-	-	2	1																					3
TAG	-	-	1	1																					2
TAT	-	-	1		1																				2
TCA	-	-	1																						1
TCC	-	-	1	2																					3
TCT	-	-	1	2																					3
TGA	-	-		1	1																				2
TGC	-	-	1																						1
TGG	-	-		1																					1
TTA	-	-	1																						1
TTC	-	-	4	1	1																				6
AAAG	-	8	2																						10
AAAT	-	1																							1
AACT	-	1																							1
AAGA	-	7	1																						8
AAGG	-	1																							1
AATC	-	1																							1
AATT	-	1	1																						2
ACAA	-		1																						1
ACAT	-			1																					1
AGAA	-	9	1																						10
AGGA	-	2																							2
AGGT	-	1																							1
AGTG	-	1																							1
ATTA	-	1																							1
ATTT	-	1																							1
CCAA	-	1																							1
CGGA	-	1																							1
CTAC	-	2																							2
CTTA	-	1																							1
CTTC	-	1	1																						2
CTTT	-	1	1																						2
GAAA	-	6	1																						7
GAAG	-	2																							2
GATA	-		1																						1
TAAG	-		1		1																				2
TATT	-	1																							1
TCTT	-	3																							3
TGAC	-		1																						1
TGTA	-	1																							1
TTCT	-	1	1																						2
TTTA	-	1	1																						2
TTTC	-	1	2																						3
TTTG	-	1																							1
AAAAC	1																								1
AAAAG	1																								1
AAAAT	5																								5
AAACA	1																								1
AAACC	2																								2
AAACG	1																								1
AAACT	1																								1
AAAGA	3																								3
AAAGC	1																								1
AAAGG	1																								1
AAATA	5																								5
AAATC	1																								1
AAATG	1																								1
AAATT	3																								3
AACAA	1																								1
AACAC	1																								1
AACCA	5																								5
AACCC	44																								44
AACCT	8	1																							9
AACGC	1																								1
AACTA	1																								1
AACTC	4																								4
AAGAA	2																								2
AAGCC	1																								1
AAGTC	2																								2
AATAA	1																								1
AATAC	1																								1
AATCC	9																								9
AATCG	1																								1
AATCT	2																								2
AATGA	1																								1
AATGC	2																								2
AATGG	1																								1
AATTG	1																								1
AATTT	2																								2
ACAAC	3																								3
ACAAG	1																								1
ACAAT	1																								1
ACCCA	15	1																							16
ACCTA	3																								3
ACTCA	1																								1
AGAAA	1																								1
AGAAC	1																								1
AGAAG	1																								1
AGAGC	2																								2
AGCAG	1																								1
AGTTG	7																								7
ATAAA	2																								2
ATAAG	1																								1
ATACC	1																								1
ATACT	1																								1
ATATA	1																								1
ATATT	1																								1
ATCCA	5	1																							6
ATGCA	1																								1
ATTAG	1																								1
ATTCA	1																								1
ATTGA	2																								2
ATTGG	3																								3
ATTTA	1																								1
ATTTG	2																								2
ATTTT	1																								1
CAAAC	4																								4
CAAAT	1																								1
CAACA	1																								1
CAACC	35	1																							36
CAACT	16																								16
CAAGT	3																								3
CAATA	2																								2
CAATC	7																								7
CAATT	1	1																							2
CAGGA	1																								1
CATTT	1																								1
CCAAA	3																								3
CCAAC	51	1																							52
CCAAG	3																								3
CCAAT	14																								14
CCCAA	13																								13
CCTGG	1																								1
CGAGA	1																								1
CGCTG	1																								1
CTAAA	3																								3
CTAAC	4																								4
CTAAT	2																								2
CTCAA	8																								8
CTTAA	2																								2
CTTAG	1																								1
CTTCA	1																								1
CTTGG	1																								1
CTTGT	1																								1
GAGGG	1																								1
GAGTT	2																								2
GATTA	1																								1
GATTG	6																								6
GCCAA	1																								1
GCTTA	1																								1
GCTTG	1																								1
GGATT	3	1																							4
GGGCT	1																								1
GGGTT	8																								8
GGTTA	5																								5
GGTTG	17																								17
GTAAA	1																								1
GTAAG	1																								1
GTGGT	1																								1
GTTAG	1																								1
GTTGA	2																								2
GTTGG	25																								25
GTTTT		1																							1
TAACC	9																								9
TAATC	3																								3
TAATT		1																							1
TAGGT	1																								1
TATAA	1																								1
TATCT	1																								1
TATGT	1																								1
TATTG	1																								1
TATTT	1																								1
TCAAA	1																								1
TCAAC	5																								5
TCAAG	1																								1
TCAAT	2																								2
TCCAA	2																								2
TCTAC	1																								1
TCTCT	1																								1
TCTTT	1																								1
TGATT	1																								1
TGGAG	1																								1
TGGAT	1																								1
TGGCT	1																								1
TGGGT	5																								5
TGTTT	1																								1
TTAAA	2																								2
TTAAG	1																								1
TTAAT	2																								2
TTACA	1																								1
TTACG		1																							1
TTAGC	1																								1
TTAGG	6																								6
TTATG	1																								1
TTATT	1																								1
TTCAA	1	1																							2
TTCAT	1																								1
TTCTC	1																								1
TTGAG	7	1																							8
TTGCG	1																								1
TTGGA	11																								11
TTGGC	1																								1
TTGGG	23																								23
TTGGT	2																								2
TTGTT	1																								1
TTTAA		1																							1
TTTAG	2																								2
TTTAT	1																								1
TTTCT	1	1																							2
TTTGG	1																								1
TTTGT	3																								3
TTTTA	1																								1
TTTTG	1																								1
AAAAGA	1																								1
AAATTT	1																								1
AACGAT	1																								1
AAGAAA	1																								1
ACAATA	1																								1
ACATCA		1																							1
ACGTTG	1																								1
ACTTTA	1																								1
AGAAAG	2																								2
AGGTGA	1																								1
AGTTAC		1																							1
ATAAAA	1																								1
ATAGTG	1																								1
ATATTG		1																							1
ATCTTC	2																								2
ATTAAA	1																								1
CACAGT	1																								1
CTAGTA	1																								1
CTCCTT	1																								1
CTGACA			1																						1
CTTCAA	1																								1
CTTTTC	1																								1
GAAAAC	1																								1
GAAGAT	2																								2
GAAGGT	1																								1
GATAAC	1																								1
GATACC	1																								1
GATGAA	1																								1
GGAAGG	1																								1
GGTGTT	1																								1
GTGAAC	1																								1
TAACAA	1																								1
TAACGA	1																								1
TAACGG	1																								1
TACTAT	1																								1
TACTTG	1																								1
TCGATT	1																								1
TGAAGA	1																								1
TGCAGT	1																								1
TGTAAA	1																								1
TTAAAA	1																								1
TTCATC	1																								1
TTGGTA	1																								1
TTGTAA	1																								1
TTTAAA	1																								1
TTTTGT	1																								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-							1	1
AC/GT	-	-	-	6	2	2		1		1	1														13
AG/CT	-	-	-	22	10	12	4	5	3	2															58
AT/AT	-	-	-	6	3																				9
CG/CG	-	-	-	2																					2
AAC/GTT	-	-	2	2																					4
AAG/CTT	-	-	48	12	5	1	1																		67
AAT/ATT	-	-	18	7	1																				26
ACC/GGT	-	-	1	1																					2
ACG/CGT	-	-	3																						3
ACT/AGT	-	-	1	1		2																			4
AGC/CTG	-	-	1																						1
AGG/CCT	-	-	3	2	2																				7
ATC/ATG	-	-	4	4	2																				10
CCG/CGG	-	-	2			1																			3
AAAC/GTTT	-	1	1																						2
AAAG/CTTT	-	36	9																						45
AAAT/ATTT	-	4	1																						5
AACC/GGTT	-	1																							1
AACT/AGTT	-	1																							1
AAGG/CCTT	-	6	1																						7
AAGT/ACTT	-	1	1		1																				3
AATC/ATTG	-	1																							1
AATT/AATT	-	2	1																						3
ACAT/ATGT	-	1		1																					2
ACCT/AGGT	-	3																							3
ACGG/CCGT	-	1																							1
ACTC/AGTG	-	1																							1
ACTG/AGTC	-		1																						1
AGAT/ATCT	-		1																						1
AAAAC/GTTTT	9	1																							10
AAAAG/CTTTT	9	1																							10
AAAAT/ATTTT	18																								18
AAACC/GGTTT	17																								17
AAACG/CGTTT	1																								1
AAACT/AGTTT	7																								7
AAAGC/CTTTG	1																								1
AAAGG/CCTTT	1																								1
AAAGT/ACTTT	1																								1
AAATC/ATTTG	6																								6
AAATG/ATTTC	4																								4
AAATT/AATTT	10	2																							12
AACAC/GTGTT	5																								5
AACAG/CTGTT	1																								1
AACAT/ATGTT	2																								2
AACCC/GGGTT	236	3																							239
AACCT/AGGTT	37	1																							38
AACGC/CGTTG	2																								2
AACGT/ACGTT		1																							1
AACTC/AGTTG	52	1																							53
AACTT/AAGTT	3																								3
AAGAC/CTTGT	2																								2
AAGAG/CTCTT	3																								3
AAGAT/ATCTT	2																								2
AAGCC/CTTGG	9																								9
AAGCT/AGCTT	3																								3
AAGGT/ACCTT	1																								1
AAGTC/ACTTG	6																								6
AAGTG/ACTTC	1																								1
AATAC/ATTGT	5																								5
AATAT/ATATT	3																								3
AATCC/ATTGG	61	2																							63
AATCG/ATTCG	1																								1
AATCT/AGATT	9																								9
AATGC/ATTGC	3																								3
AATGG/ATTCC	1																								1
AATGT/ACATT	1																								1
AATTC/AATTG	8	2																							10
ACACC/GGTGT	1																								1
ACAGG/CCTGT	1																								1
ACCAT/ATGGT	1																								1
ACGAG/CGTCT	1																								1
ACTAT/AGTAT	1																								1
ACTCC/AGTGG	1																								1
ACTCT/AGAGT	1																								1
AGAGC/CTCTG	3																								3
AGCCC/CTGGG	1																								1
AGCGC/CGCTG	1																								1
AGGCC/CCTGG	1																								1
AGGGG/CCCCT	1																								1
AAAAAC/GTTTTT	1																								1
AAAAAG/CTTTTT	2																								2
AAAAAT/ATTTTT	1																								1
AAAACG/CGTTTT	1																								1
AAAAGG/CCTTTT	1																								1
AAAATT/AATTTT	2																								2
AAAGAG/CTCTTT	2																								2
AAAGTT/AACTTT	1																								1
AAATCG/ATTTCG	1																								1
AAATGT/ACATTT	1																								1
AAATTT/AAATTT	2																								2
AACAAT/ATTGTT	2																								2
AACACC/GGTGTT	1																								1
AACATC/ATGTTG		1																							1
AACGAT/ATCGTT	3																								3
AACGGT/ACCGTT	1																								1
AACGTC/ACGTTG	1																								1
AACGTG/ACGTTC	1																								1
AACTGC/AGTTGC	1																								1
AACTGT/ACAGTT		1																							1
AACTTC/AAGTTG	1																								1
AAGATG/ATCTTC	7																								7
AAGGAG/CCTTCT	1																								1
AAGGGG/CCCCTT	1																								1
AAGGTG/ACCTTC	2																								2
AAGTAC/ACTTGT	1																								1
AATACC/ATTGGT	1																								1
AATAGT/ACTATT	1																								1
AATATC/ATATTG		1																							1
AATTAC/AATTGT	1																								1
ACACTG/AGTGTC			1																						1
ACAGTC/ACTGTG	1																								1
ACCGAT/ATCGGT	1																								1
ACTAGT/ACTAGT	1																								1
ACTATC/AGTGAT	1																								1
