Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-15/megassr/results/hub_GCA_033551735.1/fasta/hub_GCA_033551735.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           4067721
Total number of identified SSRs:                 35
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	7
4	1
5	9
6	14

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG	-	-	-	1					1
GC	-	-	-	2					2
TA	-	-	-	1					1
CAG	-	-	1	1					2
CCA	-	-	1						1
CTG	-	-	1						1
GCC	-	-	1						1
GCT	-	-	1						1
TGC	-	-	1						1
TCCT	-				1				1
CCCCA	1								1
CCGCA	1								1
CCGCG	1								1
GCGCA	1								1
GCGCC	1								1
GCGGC	2								2
GCTTG	1								1
GGCGA	1								1
AGATCC	1								1
ATGAAG			1						1
ATGAGG			1						1
CATGAG		1							1
CCAGCG	1								1
CCATGA								1	1
GAACCA			1						1
GCCAGC	2								2
GCCCTC	1								1
GCCGAG	1								1
GCTGAC	1								1
GCTGGC	2								2

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
AT/AT	-	-	-	1					1
CG/CG	-	-	-	3					3
ACC/GGT	-	-	1						1
AGC/CTG	-	-	4	1					5
CCG/CGG	-	-	1						1
AAGG/CCTT	-				1				1
AAGCC/CTTGG	1								1
ACCCC/GGGGT	1								1
ACCGC/CGGTG	1								1
AGCGC/CGCTG	1								1
AGGCG/CCTCG	1								1
CCGCG/CGCGG	4								4
AACCAG/CTGGTT			1						1
AAGATG/ATCTTC			1						1
ACCATG/ATGGTC								1	1
ACGCTG/AGCGTC	1								1
AGATCC/ATCTGG	1								1
AGCATG/ATGCTC		1							1
AGCGCC/CGCTGG	5								5
AGGATG/ATCCTC			1						1
AGGCCG/CCTCGG	1								1
AGGGCG/CCCTCG	1								1
