Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-43/megassr/results/hub_GCA_033174525.1/fasta/hub_GCA_033174525.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              39
Total size of examined sequences (bp):           1793496
Total number of identified SSRs:                 20
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	1
5	3
6	15

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
TC	-	-	-	1	1
TAT	-	-	1		1
AAAAT	1				1
TTTCT	1				1
TTTTA	1				1
AAACAA	1				1
AAAGCT	2				2
AAAGGA	1				1
AGAAAA	1				1
ATTAAT	1				1
ATTTAA	2				2
CACGGA	1				1
CTTTAG	2				2
CTTTTT	1				1
GCTCCA	1				1
TAGCAT	1				1
TTTAAA	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AG/CT	-	-	-	1	1
AAT/ATT	-	-	1		1
AAAAG/CTTTT	1				1
AAAAT/ATTTT	2				2
AAAAAC/GTTTTT	1				1
AAAAAG/CTTTTT	2				2
AAAAGG/CCTTTT	1				1
AAAGCT/AGCTTT	4				4
AAATTT/AAATTT	3				3
AATATT/AATATT	1				1
AATGCT/AGCATT	1				1
ACACGG/CCGTGT	1				1
AGCTCC/AGCTGG	1				1
