Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-136/megassr/results/hub_GCA_033174405.1/fasta/hub_GCA_033174405.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              38
Total size of examined sequences (bp):           1994150
Total number of identified SSRs:                 22
Number of SSR containing sequences:              11
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	1
4	4
5	11
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	total
TGG	-	-	1	1
AAAT	-	1		1
ATTA	-	1		1
ATTT	-	1		1
GCGT	-	1		1
AAAAC	1			1
AAAAT	2			2
AATTT	1			1
ATAAA	1			1
ATCGC	1			1
ATGCG	1			1
ATTTT	1			1
TAATT	1			1
TATAA	2			2
CTAAAG	1			1
TCTCTT	1			1
TGATTT	2			2
TGCTTT	1			1
TTTTTC	1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	total
ACC/GGT	-	-	1	1
AAAT/ATTT	-	2		2
AATT/AATT	-	1		1
ACGC/CGTG	-	1		1
AAAAC/GTTTT	1			1
AAAAT/ATTTT	4			4
AAATT/AATTT	2			2
AATAT/ATATT	2			2
ATCGC/ATGCG	2			2
AAAAAG/CTTTTT	1			1
AAAAGC/CTTTTG	1			1
AAAATC/ATTTTG	2			2
AAAGAG/CTCTTT	1			1
AAAGCT/AGCTTT	1			1
