Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-122/megassr/results/hub_GCA_033174065.1/fasta/hub_GCA_033174065.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              53
Total size of examined sequences (bp):           1983608
Total number of identified SSRs:                 32
Number of SSR containing sequences:              17
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	3
4	2
5	14
6	12

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	total
AG	-	-	-												1	1
ATA	-	-	1													1
CAT	-	-	1													1
TGG	-	-	1													1
AAAT	-	1														1
TAAT	-	1														1
AATAT	1															1
ATAAA	1															1
ATATA			1													1
ATGCG	1															1
GTTTT	1															1
TAATT	1															1
TATAA	2															2
TATAT	1															1
TATTT	2															2
TTTAA	1															1
TTTAT		1														1
TTTTC	1															1
AAAAAT	1															1
AAACCA	1															1
AAAGCA	1															1
CTTTAG	1															1
GCGGTG	1															1
GCTGGT	1															1
TGATTT	2															2
TTATGC	1															1
TTTATG	1															1
TTTTCT		1														1
TTTTTC	1															1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	total
AG/CT	-	-	-												1	1
AAT/ATT	-	-	1													1
ACC/GGT	-	-	1													1
ATC/ATG	-	-	1													1
AAAT/ATTT	-	1														1
AATT/AATT	-	1														1
AAAAC/GTTTT	1															1
AAAAG/CTTTT	1															1
AAAAT/ATTTT	3	1														4
AAATT/AATTT	2															2
AATAT/ATATT	4		1													5
ATCGC/ATGCG	1															1
AAAAAG/CTTTTT	1	1														2
AAAAAT/ATTTTT	1															1
AAAACC/GGTTTT	1															1
AAAAGC/CTTTTG	1															1
AAAATC/ATTTTG	2															2
AAACAT/ATGTTT	1															1
AAAGCT/AGCTTT	1															1
AAGCAT/ATGCTT	1															1
ACCAGC/CTGGTG	1															1
ACCGCC/CGGTGG	1															1
