Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-90/megassr/results/hub_GCA_033173465.1/fasta/hub_GCA_033173465.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              45
Total size of examined sequences (bp):           1662927
Total number of identified SSRs:                 15
Number of SSR containing sequences:              9
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
5	8
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
TC	-	-	-	1	1
AAAAT	1				1
AAATA	1				1
ATTTT	1				1
TTAAA	1				1
TTTCT	1				1
TTTTA	3				3
AAAGCT	1				1
AGCTTT	1				1
ATTTAA	1				1
TTTAAA	1				1
TTTTTC	1				1
TTTTTG	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AG/CT	-	-	-	1	1
AAAAG/CTTTT	1				1
AAAAT/ATTTT	6				6
AAATT/AATTT	1				1
AAAAAC/GTTTTT	1				1
AAAAAG/CTTTTT	1				1
AAAGCT/AGCTTT	2				2
AAATTT/AAATTT	2				2
