Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-86/megassr/results/hub_GCA_033173385.1/fasta/hub_GCA_033173385.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              35
Total size of examined sequences (bp):           1856678
Total number of identified SSRs:                 20
Number of SSR containing sequences:              14
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
5	4
6	14

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
TA	-	-	-	1	1
TC	-	-	-	1	1
AAAAT	1				1
TTTCT	1				1
TTTTA	2				2
AAACAA	1				1
AAAGCT	1				1
AAAGGA	1				1
AAATAA	1				1
AGCTTT	1				1
ATTTAA	1				1
CTTTAG	2				2
CTTTTT	1				1
GCTCCA	1				1
TAGCAT	1				1
TTAAAT	1				1
TTTAAA	1				1
TTTTTC	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AG/CT	-	-	-	1	1
AT/AT	-	-	-	1	1
AAAAG/CTTTT	1				1
AAAAT/ATTTT	3				3
AAAAAC/GTTTTT	1				1
AAAAAG/CTTTTT	2				2
AAAAAT/ATTTTT	1				1
AAAAGG/CCTTTT	1				1
AAAGCT/AGCTTT	4				4
AAATTT/AAATTT	3				3
AATGCT/AGCATT	1				1
AGCTCC/AGCTGG	1				1
