Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-114/megassr/results/hub_GCA_033173185.1/fasta/hub_GCA_033173185.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              50
Total size of examined sequences (bp):           1891242
Total number of identified SSRs:                 22
Number of SSR containing sequences:              11
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	2
4	3
5	10
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
TA	-	-	-	1	1
ATA	-	-	1		1
TGG	-	-	1		1
AAAT	-	1			1
ATTA	-	1			1
TAAT	-	1			1
AATAT	1				1
ATAAA	1				1
ATGCG	1				1
GTTTT	1				1
TAATT	1				1
TATTT	1				1
TTATA	1				1
TTTAA	1				1
TTTAT	1				1
TTTTC	1				1
AAACCA	1				1
AAAGCA	1				1
AAATCA	1				1
GCGGTG	1				1
TTATGC	1				1
TTTTTC	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	1	1
AAT/ATT	-	-	1		1
ACC/GGT	-	-	1		1
AAAT/ATTT	-	1			1
AATT/AATT	-	2			2
AAAAC/GTTTT	1				1
AAAAG/CTTTT	1				1
AAAAT/ATTTT	3				3
AAATT/AATTT	2				2
AATAT/ATATT	2				2
ATCGC/ATGCG	1				1
AAAAAG/CTTTTT	1				1
AAAACC/GGTTTT	1				1
AAAAGC/CTTTTG	1				1
AAAATC/ATTTTG	1				1
AAGCAT/ATGCTT	1				1
ACCGCC/CGGTGG	1				1
