Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-112/megassr/results/hub_GCA_032748615.1/fasta/hub_GCA_032748615.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              85
Total size of examined sequences (bp):           1936756
Total number of identified SSRs:                 29
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	3
4	1
5	11
6	12

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AG	-	-	-						1	1
AT	-	-	-	1						1
ATT	-	-	1							1
TGG	-	-	1							1
TTC	-	-					1			1
ATTT	-	1								1
AAAAC	1									1
AATAT	1									1
ATAAA	2									2
ATGCG	1									1
TAATT	1									1
TATAA	1									1
TATTT	2									2
TTAAA	1									1
TTTTC	1									1
AAACCA	1									1
AAAGCA	1									1
AGAAAA	1									1
CTAAAG	2									2
GAAAAA	1									1
GCATAA	1									1
GCGGTG	1									1
GCTAAA	1									1
TATTTT	1									1
TGATTT	1									1
TTTATC	1									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AG/CT	-	-	-						1	1
AT/AT	-	-	-	1						1
AAG/CTT	-	-					1			1
AAT/ATT	-	-	1							1
ACC/GGT	-	-	1							1
AAAT/ATTT	-	1								1
AAAAC/GTTTT	1									1
AAAAG/CTTTT	1									1
AAAAT/ATTTT	4									4
AAATT/AATTT	2									2
AATAT/ATATT	2									2
ATCGC/ATGCG	1									1
AAAAAG/CTTTTT	2									2
AAAAAT/ATTTTT	1									1
AAAACC/GGTTTT	1									1
AAAAGC/CTTTTG	1									1
AAAATC/ATTTTG	1									1
AAAGAT/ATCTTT	1									1
AAAGCT/AGCTTT	3									3
AAGCAT/ATGCTT	1									1
ACCGCC/CGGTGG	1									1
