Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-71/megassr/results/hub_GCA_032719675.1/fasta/hub_GCA_032719675.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              50
Total size of examined sequences (bp):           1797188
Total number of identified SSRs:                 10
Number of SSR containing sequences:              8
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
5	4
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	total
AAAAT	1	1
TTTCT	1	1
TTTTA	2	2
AAACAA	1	1
AAAGCT	1	1
AGAAAA	1	1
AGCTTT	1	1
ATTTAA	1	1
TTTAAA	1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	total
AAAAG/CTTTT	1	1
AAAAT/ATTTT	3	3
AAAAAC/GTTTTT	1	1
AAAAAG/CTTTTT	1	1
AAAGCT/AGCTTT	2	2
AAATTT/AAATTT	2	2
