Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-68/megassr/results/hub_GCA_032719615.1/fasta/hub_GCA_032719615.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              59
Total size of examined sequences (bp):           1836587
Total number of identified SSRs:                 15
Number of SSR containing sequences:              11
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	2
5	4
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
TC	-	-	-	1			1
ATT	-	-				1	1
TAT	-	-	1				1
AAAAT	1						1
TTTCT	1						1
TTTTA	1	1					2
AAAGCT	1						1
ATTTAA	1						1
CTTTTT	1						1
TAGCAT	1						1
TAGCTT	1						1
TTTAAA	1						1
TTTTTC	1						1
TTTTTG	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AG/CT	-	-	-	1			1
AAT/ATT	-	-	1			1	2
AAAAG/CTTTT	1						1
AAAAT/ATTTT	2	1					3
AAAAAC/GTTTTT	1						1
AAAAAG/CTTTTT	2						2
AAAGCT/AGCTTT	2						2
AAATTT/AAATTT	2						2
AATGCT/AGCATT	1						1
