Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-109/megassr/results/hub_GCA_032718085.1/fasta/hub_GCA_032718085.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              37
Total size of examined sequences (bp):           1808772
Total number of identified SSRs:                 28
Number of SSR containing sequences:              9
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	3
4	2
5	12
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AG	-	-	-						1	1
AT	-	-	-	1						1
AGA	-	-					1			1
ATA	-	-	1							1
TGG	-	-	1							1
ATTT	-	1								1
CGTG	-	1								1
AAAAC	1									1
AATAT	1									1
ATAAA	3									3
ATGCG	1									1
TAATT	1									1
TATAA	1									1
TATTT	2									2
TTAAA	1									1
TTTTC	1									1
AAACCA	1									1
AAAGCA	1									1
AGAAAA	1									1
CTAAAG	1									1
GCATAA	1									1
GCGGTG	1									1
GCTAAA	1									1
TATTTT	1									1
TGATTT	1									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AG/CT	-	-	-						1	1
AT/AT	-	-	-	1						1
AAG/CTT	-	-					1			1
AAT/ATT	-	-	1							1
ACC/GGT	-	-	1							1
AAAT/ATTT	-	1								1
ACGC/CGTG	-	1								1
AAAAC/GTTTT	1									1
AAAAG/CTTTT	1									1
AAAAT/ATTTT	5									5
AAATT/AATTT	2									2
AATAT/ATATT	2									2
ATCGC/ATGCG	1									1
AAAAAG/CTTTTT	1									1
AAAAAT/ATTTTT	1									1
AAAACC/GGTTTT	1									1
AAAAGC/CTTTTG	1									1
AAAATC/ATTTTG	1									1
AAAGCT/AGCTTT	2									2
AAGCAT/ATGCTT	1									1
ACCGCC/CGGTGG	1									1
