Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-108/megassr/results/hub_GCA_032718065.1/fasta/hub_GCA_032718065.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              38
Total size of examined sequences (bp):           1915599
Total number of identified SSRs:                 29
Number of SSR containing sequences:              10
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	3
4	2
5	12
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
AG	-	-	-					1	1
AT	-	-	-	1					1
AGA	-	-					1		1
ATA	-	-	1						1
TGG	-	-	1						1
ATTT	-	1							1
CGTG	-	1							1
AAAAC	1								1
AATAT	1								1
ATAAA	3								3
ATGCG	1								1
TAATT	1								1
TATAA	1								1
TATTT	2								2
TTAAA	1								1
TTTTC	1								1
AAACCA	1								1
AAAGCA	1								1
AAATCA	1								1
AGAAAA	1								1
CTTTAG	1								1
GCATAA	1								1
GCGGTG	1								1
GCTAAA	1								1
TATTTT	1								1
TGATTT	1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
AG/CT	-	-	-					1	1
AT/AT	-	-	-	1					1
AAG/CTT	-	-					1		1
AAT/ATT	-	-	1						1
ACC/GGT	-	-	1						1
AAAT/ATTT	-	1							1
ACGC/CGTG	-	1							1
AAAAC/GTTTT	1								1
AAAAG/CTTTT	1								1
AAAAT/ATTTT	5								5
AAATT/AATTT	2								2
AATAT/ATATT	2								2
ATCGC/ATGCG	1								1
AAAAAG/CTTTTT	1								1
AAAAAT/ATTTTT	1								1
AAAACC/GGTTTT	1								1
AAAAGC/CTTTTG	1								1
AAAATC/ATTTTG	2								2
AAAGCT/AGCTTT	2								2
AAGCAT/ATGCTT	1								1
ACCGCC/CGGTGG	1								1
