Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-30/megassr/results/hub_GCA_032717765.1/fasta/hub_GCA_032717765.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              43
Total size of examined sequences (bp):           1804159
Total number of identified SSRs:                 12
Number of SSR containing sequences:              8
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
4	1
5	5
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	total
CGTG	-	1	1
AAAAT	1		1
ATAAA	1		1
TTTCT	1		1
TTTTA	2		2
AAAGCT	1		1
ATTTAA	1		1
TTTAAA	1		1
TTTATC	1		1
TTTTTC	1		1
TTTTTG	1		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	total
ACGC/CGTG	-	1	1
AAAAG/CTTTT	1		1
AAAAT/ATTTT	4		4
AAAAAC/GTTTTT	1		1
AAAAAG/CTTTTT	1		1
AAAGAT/ATCTTT	1		1
AAAGCT/AGCTTT	1		1
AAATTT/AAATTT	2		2
