Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-21/megassr/results/hub_GCA_032717555.1/fasta/hub_GCA_032717555.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              48
Total size of examined sequences (bp):           1788166
Total number of identified SSRs:                 12
Number of SSR containing sequences:              9
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
5	5
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	total
AAAAT	1	1
GAAAA	1	1
TTTCT	1	1
TTTTA	2	2
AAAGCT	1	1
ATTTAA	1	1
CTTTAG	1	1
TTTAAA	1	1
TTTATC	1	1
TTTTTC	1	1
TTTTTG	1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	total
AAAAG/CTTTT	2	2
AAAAT/ATTTT	3	3
AAAAAC/GTTTTT	1	1
AAAAAG/CTTTTT	1	1
AAAGAT/ATCTTT	1	1
AAAGCT/AGCTTT	2	2
AAATTT/AAATTT	2	2
