Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-101/megassr/results/hub_GCA_032717225.1/fasta/hub_GCA_032717225.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              87
Total size of examined sequences (bp):           1924104
Total number of identified SSRs:                 30
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	3
4	1
5	12
6	12

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
AG	-	-	-											1	1
AT	-	-	-	1											1
ATA	-	-	1												1
TGG	-	-	1												1
TTC	-	-					1								1
ATTT	-	1													1
AAAAC	1														1
AATAT	1														1
ATAAA	2														2
ATGCG	1														1
TAATT	1														1
TATAA	2														2
TATTT	2														2
TTAAA	1														1
TTTTC	1														1
AAACCA	1														1
AAAGCA	1														1
AAGATA	1														1
AGAAAA	1														1
CTAAAG	1														1
CTTTAG	1														1
GAAAAA	1														1
GCATAA	1														1
GCGGTG	1														1
GCTAAA	1														1
TATTTT	1														1
TGATTT	1														1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
AG/CT	-	-	-											1	1
AT/AT	-	-	-	1											1
AAG/CTT	-	-					1								1
AAT/ATT	-	-	1												1
ACC/GGT	-	-	1												1
AAAT/ATTT	-	1													1
AAAAC/GTTTT	1														1
AAAAG/CTTTT	1														1
AAAAT/ATTTT	4														4
AAATT/AATTT	2														2
AATAT/ATATT	3														3
ATCGC/ATGCG	1														1
AAAAAG/CTTTTT	2														2
AAAAAT/ATTTTT	1														1
AAAACC/GGTTTT	1														1
AAAAGC/CTTTTG	1														1
AAAATC/ATTTTG	1														1
AAAGAT/ATCTTT	1														1
AAAGCT/AGCTTT	3														3
AAGCAT/ATGCTT	1														1
ACCGCC/CGGTGG	1														1
