Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-2/megassr/results/hub_GCA_032652745.1/fasta/hub_GCA_032652745.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              42
Total size of examined sequences (bp):           1815392
Total number of identified SSRs:                 13
Number of SSR containing sequences:              10
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
4	1
5	4
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	total
GCGT	-	1	1
AAAAT	1		1
AGAAA	1		1
TAAAA	1		1
TTTTA	1		1
AAAGCT	1		1
AGCTTT	1		1
ATTTAA	1		1
CTTTAG	1		1
GAAAAA	1		1
TTTAAA	1		1
TTTTTC	1		1
TTTTTG	1		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	total
ACGC/CGTG	-	1	1
AAAAG/CTTTT	1		1
AAAAT/ATTTT	3		3
AAAAAC/GTTTTT	1		1
AAAAAG/CTTTTT	2		2
AAAGCT/AGCTTT	3		3
AAATTT/AAATTT	2		2
