Specifications
==============

Sequence source file: "/data/brick1/zmahmoud/africandsi-megassr/megassr-v3/results/hub_GCA_032191565.1/fasta/hub_GCA_032191565.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              374796
Total size of examined sequences (bp):           132439742
Total number of identified SSRs:                 7272
Number of SSR containing sequences:              7055
Number of sequences containing more than 1 SSR:  205
Number of SSRs present in compound formation:    136


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	7
2	1618
3	1675
4	687
5	2830
6	455

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2							2
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-							1	1
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-				1				1
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2				1			3
AC	-	-	-	26	8	4	5	1																	44
AG	-	-	-	50	27	19	9	5	1	2	1														114
AT	-	-	-	295	127	52	19	14	9	2	1														519
CA	-	-	-	35	9	8	1	1																	54
CG	-	-	-	8	1	1	1																		11
CT	-	-	-	26	11	8	6	6	1	3	2														63
GA	-	-	-	53	18	8	5	1	2	2															89
GC	-	-	-	5	1																				6
GT	-	-	-	30	4	5		1																	40
TA	-	-	-	266	127	60	28	22	10	4	2	1													520
TC	-	-	-	59	18	13	3	3	3		2														101
TG	-	-	-	33	10	6	5	2	1																57
AAC	-	-	14	6	3																				23
AAG	-	-	22	6		1																			29
AAT	-	-	130	24	1																				155
ACA	-	-	13	3	1		1																		18
ACC	-	-	1	1																					2
ACG	-	-	4	1	1																				6
ACT	-	-	8	1		1																			10
AGA	-	-	26	3																					29
AGC	-	-	3	2																					5
AGG	-	-	11	2																					13
AGT	-	-	11	3	1	2																			17
ATA	-	-	116	20	6	1																			143
ATC	-	-	15	2	3																				20
ATG	-	-	8	2																					10
ATT	-	-	129	18	3	2	1																		153
CAA	-	-	23	11	3	1	1																		39
CAC	-	-	4																						4
CAG	-	-	14	3	2	1																			20
CAT	-	-	9	4	1		1																		15
CCA	-	-	1																						1
CCG	-	-	5	1																					6
CCT	-	-	2	2	1																				5
CGA	-	-	7	3	1																				11
CGC	-	-	11	3		1																			15
CGG	-	-	6		1																				7
CGT	-	-	10	2	4																				16
CTA	-	-	4	2																					6
CTC	-	-	3	2	2	1																			8
CTG	-	-	2	1	1		1																		5
CTT	-	-	20	2				1																	23
GAA	-	-	33	5	3																				41
GAC	-	-	8	3		1																			12
GAG	-	-	15	1	2	1																			19
GAT	-	-	8	1																					9
GCA	-	-	2	1																					3
GCC	-	-	1	2		1																			4
GCG	-	-	5	2	1																				8
GCT	-	-	2	1																					3
GGA	-	-	7	3	4																				14
GGC	-	-	7	6			1																		14
GGT	-	-	1																						1
GTA	-	-	7	2	1																				10
GTC	-	-	3	1	1	1																			6
GTG	-	-		2																					2
GTT	-	-	6	3	1																				10
TAA	-	-	150	31	4																				185
TAC	-	-	13	4	1	1		1																	20
TAG	-	-	9	6																					15
TAT	-	-	105	26	3																				134
TCA	-	-	11	7																					18
TCC	-	-	15	2	2	3																			22
TCG	-	-	9	2																					11
TCT	-	-	20	4	2																				26
TGA	-	-	15	3	5		1																		24
TGC	-	-	7	2	2																				11
TGG	-	-	2																						2
TGT	-	-	8	3		1																			12
TTA	-	-	139	28	8																				175
TTC	-	-	21	3	1	2																			27
TTG	-	-	15	5	2		1																		23
AAAC	-	4	1																						5
AAAG	-	4																							4
AAAT	-	50	2																						52
AACA	-	7																							7
AACC	-	1																							1
AACT	-	4																							4
AAGA	-	5																							5
AAGG	-			1																					1
AAGT	-	3																							3
AATA	-	29	6																						35
AATC	-	8	2																						10
AATG	-	5	1																						6
AATT	-	29	2																						31
ACAA	-	5																							5
ACAT	-	1																							1
ACCA	-	2																							2
ACCT	-	1		1																					2
ACGA	-		1																						1
ACGG	-	2																							2
ACTA	-	4																							4
ACTT	-	1	1																						2
AGAA	-	6																							6
AGAC	-	1																							1
AGAT	-	4																							4
AGCA	-	2																							2
AGGA	-	1																							1
AGGC	-	1																							1
AGTA	-	2	1																						3
AGTT	-	1	1																						2
ATAA	-	20	3	1																					24
ATAC	-	1																							1
ATAG	-	1	1																						2
ATCA	-	8																							8
ATCG	-	1																							1
ATCT	-	3																							3
ATGA	-	3																							3
ATGC	-	1																							1
ATGG	-	1	1																						2
ATGT	-	1																							1
ATTA	-	22																							22
ATTC	-	4																							4
ATTG	-	5	1																						6
ATTT	-	25	4																						29
CAAA	-	3	2																						5
CAAC	-	2	1																						3
CAAT	-	1																							1
CACT	-	2																							2
CAGA	-	1																							1
CAGT	-	1																							1
CATA	-	1																							1
CATC	-	1																							1
CATT	-	2																							2
CCAT	-	2																							2
CCTT	-	3		1																					4
CGAA	-	1																							1
CGAT	-			1																					1
CGCA	-	1																							1
CGTA	-	1																							1
CTAA	-	3	1																						4
CTAT	-	2																							2
CTCA	-	2	1																						3
CTTA	-	3	1																						4
CTTC	-	1																							1
CTTT	-	1																							1
GAAA	-	6		1																					7
GAAC	-	1	1																						2
GAAG	-		1																						1
GAAT	-	7	1																						8
GACC	-	1																							1
GACT	-	3																							3
GAGT	-	2																							2
GATA	-	2																							2
GATT	-	3																							3
GCAG	-	1																							1
GCAT	-		1																						1
GCGT	-	1																							1
GGAA	-	2	1																						3
GGAC	-	1																							1
GGAT	-	1																							1
GGTT	-	1																							1
GTAA	-	3																							3
GTAG	-	1																							1
GTAT	-	2	1																						3
GTCC	-	1																							1
GTCT	-	1																							1
GTGC	-	1																							1
GTTA	-	2	1																						3
GTTG	-	1																							1
GTTT	-	3				1																			4
TAAA	-	29	4	1																					34
TAAC	-	1																							1
TAAG	-	1	1																						2
TAAT	-	9	2	1																					12
TACA	-	3																							3
TACC	-	1																							1
TACT	-	1	1			1																			3
TAGA	-	4																							4
TAGT	-	3																							3
TATC	-	7																							7
TATG	-	8																							8
TATT	-	17	4																						21
TCAA	-	6	2																						8
TCAC	-	1	1																						2
TCAT	-	3																							3
TCCG	-			1																					1
TCCT	-		1																						1
TCGT	-	1																							1
TCTA	-	3	3	1																					7
TCTG	-	1	1																						2
TCTT	-	4																							4
TGAA	-	5		1																					6
TGAC	-	1																							1
TGAG	-	1																							1
TGAT	-	7	1																						8
TGGA	-	1																							1
TGGT	-	2																							2
TGTA	-	3																							3
TGTC	-	1																							1
TGTT	-	3																							3
TTAA	-	34	2																						36
TTAC	-	6																							6
TTAG	-	1																							1
TTAT	-	21	1																						22
TTCA	-	5																							5
TTCC	-	1																							1
TTCG	-	1																							1
TTCT	-	2																							2
TTGA	-	7																							7
TTGT	-		1	1																					2
TTTA	-	21	5	2																					28
TTTC	-	8	2																						10
TTTG	-	4																							4
AAAAC	23		1																						24
AAAAG	6																								6
AAAAT	83	2																							85
AAACA	18	1																							19
AAACG	4																								4
AAACT	5																								5
AAAGA	10																								10
AAAGC	3																								3
AAAGG	3																								3
AAAGT	5																								5
AAATA	43	1																							44
AAATC	6																								6
AAATG	15	1																							16
AAATT	48	1																							49
AACAA	23																								23
AACAC	2	1																							3
AACAG	4																								4
AACAT	6	1	1																						8
AACCA	2																								2
AACCC	22	4	2																						28
AACCT	1	1																							2
AACGA	6	1																							7
AACGC	2																								2
AACGG	2	1																							3
AACGT	4																								4
AACTA	7	1																							8
AACTC	2																								2
AACTT	7																								7
AAGAA	6																								6
AAGAG	1	1																							2
AAGAT	1																								1
AAGCA	1	1																							2
AAGGA	4																								4
AAGGC	1																								1
AAGGG	1																								1
AAGGT	1																								1
AAGTA	5																								5
AAGTC	1																								1
AAGTG	4	1																							5
AAGTT	6																								6
AATAA	35	3																							38
AATAC	14																								14
AATAG	18	1																							19
AATAT	14	1																							15
AATCA	8																								8
AATCC	1																								1
AATCG	2																								2
AATCT	4																								4
AATGA	11	1																							12
AATGT	3	2																							5
AATTA	41																								41
AATTC	4	3																							7
AATTG	7																								7
AATTT	39																								39
ACAAA	15																								15
ACAAC	1																								1
ACAAG	1																								1
ACAAT	8	1																							9
ACACA	1																								1
ACACC	1																								1
ACACT	3																								3
ACAGA	3																								3
ACAGT	2																								2
ACATA	6																								6
ACATG	3																								3
ACATT	8																								8
ACCAA	1	1																							2
ACCCA	15	2	1																						18
ACCCT	2																								2
ACCGA	1																								1
ACCTA		1																							1
ACCTT	2																								2
ACGAA	2																								2
ACGAT	2																								2
ACGCG	1																								1
ACGCT	1																								1
ACGTT	4																								4
ACTAA	10	1																							11
ACTAC	4																								4
ACTAT	3																								3
ACTCG	1																								1
ACTGA	2																								2
ACTGG			1																						1
ACTGT	2																								2
ACTTA	2	1																							3
ACTTC	1																								1
ACTTT	7																								7
AGAAA	9																								9
AGAAC	3																								3
AGAAG	5																								5
AGAAT	7																								7
AGACC	1																								1
AGACT	1																								1
AGAGA	1	1																							2
AGAGG	2																								2
AGATA	3																								3
AGATT	4																								4
AGCAA	1																								1
AGCAC		1																							1
AGGAA	2	1																							3
AGGAG	1																								1
AGGAT	2																								2
AGGGG	1																								1
AGTAA	2																								2
AGTAC	1																								1
AGTAG	1																								1
AGTAT	3																								3
AGTCA		1																							1
AGTCC		1																							1
AGTGA	2																								2
AGTGG	1																								1
AGTGT		1																							1
AGTTA	2																								2
AGTTC	1																								1
AGTTG	1																								1
AGTTT	7																								7
ATAAA	20	1																							21
ATAAC	6	2																							8
ATAAG	3																								3
ATAAT	17	1																							18
ATACA	5																								5
ATACC	1																								1
ATACG	1																								1
ATACT	3																								3
ATAGA	4	1																							5
ATAGG	3																								3
ATAGT	2																								2
ATATA	19																								19
ATATC	2	1																							3
ATATG	7																								7
ATATT	10	1																							11
ATCAA	2	1																							3
ATCAG	3	1																							4
ATCAT	6	1																							7
ATCCA	2																								2
ATCCC	1																								1
ATCCT	1																								1
ATCGA	1																								1
ATCGC	1																								1
ATCGG	1																								1
ATCGT	1																								1
ATCTA	2																								2
ATCTT	3																								3
ATGAA	5																								5
ATGAC	4																								4
ATGAG	1																								1
ATGAT	8	1																							9
ATGTA	8																								8
ATGTC	2																								2
ATGTG	2																								2
ATGTT	3	1																							4
ATTAA	22	2																							24
ATTAC	6																								6
ATTAG	6																								6
ATTAT	12																								12
ATTCA	6																								6
ATTCC	7																								7
ATTCT	7																								7
ATTGA	7	1																							8
ATTGC	2																								2
ATTGG	2																								2
ATTGT	8	1																							9
ATTTA	29																								29
ATTTC	10																								10
ATTTG	8																								8
ATTTT	48	1																							49
CAAAA	13	1																							14
CAAAC	1																								1
CAAAG	1																								1
CAAAT	3																								3
CAACA	1																								1
CAACC	13	6																							19
CAACG	2																								2
CAAGA	1																								1
CAAGT	2																								2
CAATA	10																								10
CAATC	2																								2
CAATT	5	1																							6
CACAA	3																								3
CACAT	3																								3
CACTA	2																								2
CAGAA	1	1	1																						3
CAGAG		1																							1
CAGAT	1																								1
CAGGA	1																								1
CAGTT	1																								1
CATAA	4																								4
CATAT	2		1																						3
CATCA	2																								2
CATCT	1																								1
CATTA	3																								3
CATTG	1																								1
CATTT	12																								12
CCAAA	2																								2
CCAAC	17	3	1																						21
CCAAG	1																								1
CCAGC	1																								1
CCAGT	1																								1
CCATT	1																								1
CCCAA	10	2																							12
CCCAT	1																								1
CCCCG	1																								1
CCCTA	1																								1
CCCTG	1																								1
CCGAA	1																								1
CCGCG	1																								1
CCGGC	1																								1
CCTAA	3	1																							4
CCTAG	1																								1
CCTTA			1																						1
CCTTG	1																								1
CCTTT	1																								1
CGAAA	6	1																							7
CGACG	1																								1
CGATC	1																								1
CGCCG	1		1																						2
CGCGA	1																								1
CGGCG	1	2																							3
CGGCT	1																								1
CGGTT	1																								1
CGTAA	1																								1
CGTAT	1																								1
CGTCA	1																								1
CGTCC		1																							1
CGTTA	2																								2
CGTTC	1																								1
CGTTT	2																								2
CTAAA	16																								16
CTAAC	3																								3
CTAAT	4	1																							5
CTACA	1																								1
CTACT	2																								2
CTAGA	3																								3
CTATA	2																								2
CTATC	2																								2
CTATT	6																								6
CTCAA	2																								2
CTCAC	1																								1
CTCAT	3																								3
CTCGA	1																								1
CTCTG	2																								2
CTCTT		2																							2
CTGAT	1																								1
CTGCA	1																								1
CTGCC	1																								1
CTGGC			1																						1
CTGGT	2																								2
CTGTA	2																								2
CTGTT	2																								2
CTTAA	4	1																							5
CTTAC	1																								1
CTTAT		1																							1
CTTCA	1																								1
CTTCT	3		1																						4
CTTGA	1																								1
CTTTA	4																								4
CTTTC	3																								3
CTTTT	6																								6
GAAAA	10																								10
GAAAC	8																								8
GAAAG	4	1																							5
GAAAT	10																								10
GAACA	3																								3
GAACG	2																								2
GAACT	2																								2
GAAGA	3	1																							4
GAAGG	1																								1
GAAGT	2																								2
GAATA	5																								5
GAATC		1																							1
GAATG	3																								3
GAATT	6	1																							7
GACAC	1																								1
GACAT	1																								1
GACCA	1																								1
GACGA	1																								1
GACGC	1																								1
GACGT	1																								1
GAGAA	2																								2
GAGAC	1																								1
GAGAG	2																								2
GAGAT	1																								1
GAGTA		1																							1
GAGTT		1																							1
GATAA	4																								4
GATAG	2																								2
GATAT	3	1																							4
GATCA	1																								1
GATCG	1																								1
GATCT	1																								1
GATGT	1																								1
GATTA	3																								3
GATTC	1																								1
GATTG	4																								4
GATTT	7	1																							8
GCAAA	2																								2
GCAGG	2																								2
GCGAC	2																								2
GCGCC	1																								1
GCGTC	1																								1
GCTGT	1																								1
GCTTA	1																								1
GGAAA	4																								4
GGAAC	1	1																							2
GGAAT	2																								2
GGACC		1																							1
GGACG	1																								1
GGACT	1																								1
GGAGC	1																								1
GGAGT	1																								1
GGATA	1																								1
GGATC			1																						1
GGATG	1		1																						2
GGCAC	1																								1
GGCAG	1																								1
GGCAT	1																								1
GGCGA	1																								1
GGGAA	2																								2
GGGAC	1																								1
GGGCA	1																								1
GGGTT	12																								12
GGTAA	2																								2
GGTAG	1																								1
GGTCC		1																							1
GGTCT	1																								1
GGTGT		1																							1
GGTTA	1																								1
GGTTG	9	5	2																						16
GTAAA	4																								4
GTAAC	4																								4
GTAAT	5																								5
GTACT	1																								1
GTATA	1																								1
GTATC	1																								1
GTATT	3																								3
GTCAA	2																								2
GTCCT	1																								1
GTCTA	1	1																							2
GTCTG	1																								1
GTGAA	1																								1
GTGAC	1																								1
GTGAT	3																								3
GTGCA	1																								1
GTGGA	1																								1
GTGGG		1																							1
GTGTA	1																								1
GTGTC	1																								1
GTGTT	1																								1
GTTAA	5	1																							6
GTTAC	1																								1
GTTAG	1																								1
GTTAT	2																								2
GTTCA			1																						1
GTTCC	1																								1
GTTCT	1																								1
GTTGA	3																								3
GTTGC		1																							1
GTTGG	20	3	1																						24
GTTGT	2																								2
GTTTA	6	1																							7
GTTTC	7																								7
GTTTT	13																								13
TAAAA	42	2																							44
TAAAC	11		1																						12
TAAAG	5																								5
TAAAT	16	2																							18
TAACA	5																								5
TAACC	1																								1
TAACG	10																								10
TAACT	1																								1
TAAGA	2																								2
TAAGG	1																								1
TAAGT	5																								5
TAATA	14																								14
TAATC	4																								4
TAATG	11																								11
TAATT	27	1																							28
TACAA	12																								12
TACAG	8																								8
TACAT	1																								1
TACCT	1																								1
TACGA	2																								2
TACGT	1		1																						2
TACTA	8																								8
TACTC	1																								1
TACTG	6																								6
TACTT	1																								1
TAGAA	15	3																							18
TAGAG	1	1																							2
TAGAT	2	1																							3
TAGGG	3																								3
TAGTA	2																								2
TAGTC	5																								5
TAGTG	3																								3
TAGTT	9	1																							10
TATAA	15																								15
TATAC	3																								3
TATAG	6																								6
TATAT	17																								17
TATCA	2	1																							3
TATCC	2																								2
TATCG	1																								1
TATCT	5																								5
TATGA	2																								2
TATTA	15	1																							16
TATTC	14																								14
TATTG	15	1																							16
TATTT	33	1																							34
TCAAA	10	1																							11
TCAAC	4																								4
TCAAG	1																								1
TCAAT	7																								7
TCACG	1	1																							2
TCACT	1																								1
TCAGA	2																								2
TCATA	2																								2
TCATC	2																								2
TCATT	3	1																							4
TCCAA	3																								3
TCCAT	2																								2
TCCCG	2																								2
TCCTG	1																								1
TCCTT	1																								1
TCGAA	1																								1
TCGAC	1																								1
TCGAG	1																								1
TCGAT	1																								1
TCGGA	1																								1
TCGTA	1																								1
TCGTT	4	1																							5
TCTAA	3	1																							4
TCTAC	2	1																							3
TCTAG	2																								2
TCTAT	6																								6
TCTCT	2																								2
TCTGA	1																								1
TCTGG	1																								1
TCTGT	2																								2
TCTTA	5																								5
TCTTC	2	1																							3
TCTTG	1																								1
TCTTT	7				1																				8
TGAAA	14	1																							15
TGAAC	1																								1
TGAAG	1																								1
TGAAT	2	1																							3
TGACA	5																								5
TGACC	1																								1
TGAGA	2																								2
TGATA	3	2																							5
TGATC	1																								1
TGATG	3																								3
TGATT	6																								6
TGCAA	3																								3
TGCAT	2																								2
TGCGC	1																								1
TGCTA	1																								1
TGCTC	1																								1
TGGAA	3																								3
TGGAC	1																								1
TGGAT	3																								3
TGGGA	1																								1
TGGGT	13	4																							17
TGTAA	9																								9
TGTAC	1	3																							4
TGTAG	3																								3
TGTAT	3	1																							4
TGTCA	1																								1
TGTCC	1																								1
TGTCG		1																							1
TGTGA	3																								3
TGTGT			1																						1
TGTTA	7																								7
TGTTC	2																								2
TGTTG	2	1																							3
TGTTT	5	1																							6
TTAAA	36																								36
TTAAC	2																								2
TTAAG	4																								4
TTAAT	34	1																							35
TTACA	9	1																							10
TTACC		1																							1
TTACG	7	1																							8
TTACT	4																								4
TTAGA	2																								2
TTAGC	1																								1
TTAGG	1																								1
TTAGT	5																								5
TTATA	11																								11
TTATC	1																								1
TTATG	5	1																							6
TTATT	28																								28
TTCAA	10																								10
TTCAC	1																								1
TTCAG	6																								6
TTCAT	4																								4
TTCCC	1																								1
TTCCG	2																								2
TTCGA	1	1																							2
TTCGG	1																								1
TTCGT	1																								1
TTCTA	2	1																							3
TTCTC	1																								1
TTCTG	4	1	1																						6
TTCTT	11																								11
TTGAA	14																								14
TTGAG	1																								1
TTGAT	5	1																							6
TTGCC	1																								1
TTGCT	1																								1
TTGGA	1	1																							2
TTGGG	10																								10
TTGGT	1																								1
TTGTA	6	2																							8
TTGTC	1	1																							2
TTGTG	3	1																							4
TTGTT	9																								9
TTTAA	41																								41
TTTAC	8																								8
TTTAG	21																								21
TTTAT	33	3																							36
TTTCA	6																								6
TTTCC	1																								1
TTTCG	7																								7
TTTCT	7																								7
TTTGA	4																								4
TTTGC	1																								1
TTTGT	11																								11
TTTTA	45	1																							46
TTTTC	15																								15
TTTTG	31		1																						32
AAAAAC	1																								1
AAAAAT	5																								5
AAAACA	2																								2
AAAACG	1																								1
AAAAGT	1																								1
AAAATC	1																								1
AAAATT	4																								4
AAACAA	2																								2
AAACAC	1																								1
AAACTA	1																								1
AAATAA	3																								3
AAATAC	1																								1
AAATCA	1																								1
AAATCT	1																								1
AAATGG	1																								1
AAATTC	2																								2
AACATG	1																								1
AACCAG		1																							1
AACCTC	1																								1
AACCTT	1																								1
AACGCC	1																								1
AACGGG	1																								1
AACGTT	1																								1
AACTTC	1																								1
AAGGAT	1																								1
AAGGCA	1																								1
AAGTCA		1																							1
AAGTCT	1																								1
AAGTGG	1																								1
AAGTGT	1																								1
AAGTTC		1																							1
AAGTTG	1																								1
AATAAC	4																								4
AATACA	1																								1
AATACC		1																							1
AATACG	1																								1
AATACT	2																								2
AATAGG	1																								1
AATAGT	1																								1
AATCCG	1																								1
AATCCT	1																								1
AATCTT	1																								1
AATGTC	1																								1
AATTAA	4																								4
AATTAC	1																								1
AATTCT	1																								1
AATTGG	1																								1
AATTGT	1																								1
AATTTT	1																								1
ACAAAT	1																								1
ACAACC	1																								1
ACAAGG	1																								1
ACAAGT	1																								1
ACAATA	1																								1
ACAATT	1																								1
ACAGAA	1																								1
ACAGTA	1																								1
ACATAG	1																								1
ACATCA	2																								2
ACATGA	1																								1
ACCATC	1																								1
ACCCGC	1																								1
ACCCTC	1																								1
ACCCTT		1																							1
ACCTGA	1																								1
ACGCGA		1																							1
ACTACA	1																								1
ACTACC	1																								1
ACTATA	1																								1
ACTATG	1																								1
ACTGAG	1																								1
ACTGTG	1																								1
ACTGTT	1																								1
ACTTGA	2																								2
AGAAGG	1																								1
AGACGA	1																								1
AGACGT	2																								2
AGAGTA	1																								1
AGATTA	1																								1
AGCATC	1	1																							2
AGCGGC	1																								1
AGGATC		1																							1
AGTCTA	1																								1
AGTCTC	1																								1
AGTTAG	1																								1
AGTTAT	1																								1
AGTTCT	1																								1
AGTTGG	1																								1
AGTTGT	1																								1
ATAACG	1																								1
ATAATC	1																								1
ATACCT	1																								1
ATATAA	1																								1
ATATCA	1																								1
ATCAAT	1																								1
ATCCAA	1																								1
ATCCTA	1																								1
ATCGAC	1																								1
ATCGTT	2																								2
ATCTTC	1																								1
ATGAAC	1																								1
ATGACG	2																								2
ATGAGA	1																								1
ATGAGC	1																								1
ATGATA	1																								1
ATGATC	1																								1
ATGTCG	1																								1
ATGTGT	1																								1
ATTAAC	1																								1
ATTAAG	1																								1
ATTACG	1																								1
ATTATA	1																								1
ATTCAA	1																								1
ATTCCC	1																								1
ATTGAA	1																								1
ATTGTA	1																								1
ATTGTT	1																								1
ATTTAA	1																								1
ATTTAC	2																								2
ATTTAT	1																								1
ATTTTA	3																								3
CAAAAG	1																								1
CAAAGT	1																								1
CAACGT		1																							1
CAATAA	1																								1
CAATAC	2																								2
CAATTT	1																								1
CACCTC	1																								1
CACGAG		1																							1
CACTAA	1																								1
CAGAAA	4	1																							5
CAGCGG	1																								1
CAGGTG	1																								1
CAGTAA	1	1																							2
CATTAA	1																								1
CATTGA	1																								1
CCAAAG	1																								1
CCAATT	1																								1
CCATGT	1																								1
CCATTT	1																								1
CCCTCG	1																								1
CCGAAA	1																								1
CCGACA	1																								1
CCGACG	2	2																							4
CCGCAC	1																								1
CCGTTG	1																								1
CCTTCT	1																								1
CCTTGA	1																								1
CCTTGT	1																								1
CGAAAA	1																								1
CGAAAC	1																								1
CGAAAG	1																								1
CGAACG		1																							1
CGAAGA	1																								1
CGAAGC	1																								1
CGACAT	2																								2
CGACGC	7	2																							9
CGACGG	1																								1
CGACGT	1																								1
CGATGA	1																								1
CGATTA	1																								1
CGCAAA	1																								1
CGCAGC	1																								1
CGCCGA	1																								1
CGGCAT		1																							1
CGGCGA	1																								1
CGGCGT	2																								2
CGGGAC	1																								1
CGGGCG	1																								1
CGGTGC	1																								1
CGGTGG	1																								1
CGTCAG	1																								1
CGTCGC	1	1																							2
CGTCGG	1																								1
CGTGCC	1																								1
CGTGCT	1																								1
CGTTCC		1																							1
CTAAAA	1																								1
CTAAGT	1																								1
CTAATA	1																								1
CTACTT	1																								1
CTATCA	1																								1
CTCAAC	1																								1
CTCACT	1																								1
CTCATG	1																								1
CTCCTG	1																								1
CTCGTG		1																							1
CTGACT	1																								1
CTGGTG	1		1																						2
CTGTGG		1																							1
CTGTTA	1																								1
CTGTTG	1																								1
CTTATA	1																								1
CTTATC	1																								1
CTTCGC	2																								2
CTTGAA	1																								1
CTTTCC	1																								1
GAAAAA	1																								1
GAAATG	1																								1
GAAGGC	1																								1
GACGAG	1																								1
GACGCC		1																							1
GACGGC	1																								1
GAGACG		1																							1
GAGCAC	3	1																							4
GAGCAT	1																								1
GAGTTA	1																								1
GATACA	1																								1
GATCAT	1																								1
GATCCA	1																								1
GATCCT	1																								1
GATCGT		1																							1
GATGAG	1																								1
GATGCA	1																								1
GATTCA	1																								1
GATTCT	1																								1
GATTTC	1																								1
GCAGTG	1																								1
GCATGA	1																								1
GCCGAC	1																								1
GCCGCT	1																								1
GCCGGG		1																							1
GCCTCC	1																								1
GCCTTC		1																							1
GCGACG	1																								1
GCGGAA	1																								1
GCGGAG	1																								1
GCGGGT			1																						1
GCGTCA	1																								1
GCGTCG	2	1																							3
GCGTGT	1																								1
GCGTTC	1																								1
GCTCCT	1																								1
GCTCGT	1																								1
GCTGAA		1																							1
GCTGCG	1	1																							2
GCTGTT	1																								1
GGAAAT	1																								1
GGAAGT	1																								1
GGACGA	1																								1
GGAGAA		1																							1
GGAGCA	1																								1
GGCAAC	1																								1
GGCATA	1																								1
GGCGTC	2																								2
GGGAGA	1																								1
GGGCAT	1																								1
GGTAAT	1																								1
GGTATC		1																							1
GGTATT	1																								1
GGTCAA	1																								1
GGTCCG	1																								1
GTAAAA	1																								1
GTACGC	1																								1
GTATTA	1																								1
GTCACG	1																								1
GTCCGG	1																								1
GTCGGC	1																								1
GTCTCC		1																							1
GTGACT	1																								1
GTTACG	1																								1
GTTATT	1																								1
GTTGAC	1																								1
GTTGGA	1																								1
GTTTTA	1																								1
TAAAAA	1																								1
TAAAGA	1																								1
TAAATT	1																								1
TAACAA	3																								3
TAAGTA	1																								1
TAAGTC	1																								1
TAATAC	1																								1
TAATTC	1																								1
TAATTG	3																								3
TACACT	1																								1
TACAGT	1																								1
TACGGC	1																								1
TACGTC	1																								1
TACTAG	1																								1
TACTTA	1																								1
TACTTC	1																								1
TAGACA	1																								1
TAGCCA	1																								1
TAGCGT		1																							1
TAGTAC	2																								2
TAGTTC	1																								1
TATAGA	1																								1
TATCCA	1																								1
TATCTA	1																								1
TATGTA	1																								1
TATGTC	1																								1
TATTAC	1																								1
TATTAG	2																								2
TATTTG	1																								1
TATTTT	1																								1
TCAAAA		1																							1
TCAAAT	1																								1
TCAACA	3																								3
TCACTA	1																								1
TCAGCG	1																								1
TCATAA	1																								1
TCATTA	1																								1
TCATTT	1																								1
TCCACT	1																								1
TCCCGA	1																								1
TCCTAA	1																								1
TCCTCG		1																							1
TCGACA	1																								1
TCGATA	1																								1
TCGATG	1																								1
TCGGCG		1																							1
TCGTAG		1																							1
TCGTCT	1																								1
TCGTGG		1																							1
TCTAAA	2																								2
TCTATA	1																								1
TCTATG	1																								1
TCTATT	1																								1
TCTCTT	1																								1
TCTTCA	2																								2
TCTTCC	1																								1
TCTTCG	1																								1
TCTTGA	1																								1
TGAAAA	3																								3
TGAAGA	2																								2
TGACCT	1																								1
TGAGAA	1																								1
TGAGGA	1																								1
TGATAA	1																								1
TGATAC	1																								1
TGATAT	1																								1
TGATCT	1																								1
TGATTC	1																								1
TGCAAA	1																								1
TGCCTC				1																					1
TGCTAA	1																								1
TGCTCG	1																								1
TGCTCT	1																								1
TGCTGT	1																								1
TGCTTT	1																								1
TGGAAT	1																								1
TGGAGA	1																								1
TGGCGG	1																								1
TGGTGT	1	1																							2
TGTAAA	2																								2
TGTAGC		1																							1
TGTATA	1																								1
TGTCAT	2																								2
TGTTTT	1																								1
TTAAAA	1																								1
TTAATG	1																								1
TTACTA	1	1																							2
TTAGGA	1																								1
TTATGG	1																								1
TTCAAT	2																								2
TTCCAA	1																								1
TTCCTC	1																								1
TTCGTT			1																						1
TTCTCT	1																								1
TTCTGA	1																								1
TTCTTG	1																								1
TTGGTA	1																								1
TTGTAA	1																								1
TTGTCC		1																							1
TTGTTT	1																								1
TTTATT	2																								2
TTTCAA	1																								1
TTTCAG	1																								1
TTTCCC	1																								1
TTTCGG	1																								1
TTTGAA	2																								2
TTTGAG	1																								1
TTTTAA	2																								2
TTTTAC	1																								1
TTTTTA	2																								2
TTTTTC	1																								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4				1			5
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-				1			1	2
AC/GT	-	-	-	124	31	23	11	5	1																195
AG/CT	-	-	-	188	74	48	23	15	7	7	5														367
AT/AT	-	-	-	561	254	112	47	36	19	6	3	1													1039
CG/CG	-	-	-	13	2	1	1																		17
AAC/GTT	-	-	79	31	10	2	3																		125
AAG/CTT	-	-	142	23	6	3		1																	175
AAT/ATT	-	-	769	147	25	3	1																		945
ACC/GGT	-	-	9	3																					12
ACG/CGT	-	-	41	12	7	2																			62
ACT/AGT	-	-	52	18	3	4		1																	78
AGC/CTG	-	-	30	10	5	1	1																		47
AGG/CCT	-	-	53	12	11	5																			81
ATC/ATG	-	-	66	19	9		2																		96
CCG/CGG	-	-	35	14	2	2	1																		54
AAAC/GTTT	-	29	4	1		1																			35
AAAG/CTTT	-	36	2	1																					39
AAAT/ATTT	-	212	29	4																					245
AACC/GGTT	-	9	1																						10
AACG/CGTT	-	4	2																						6
AACT/AGTT	-	19	3																						22
AAGC/CTTG	-	2																							2
AAGG/CCTT	-	8	3	2																					13
AAGT/ACTT	-	20	5			1																			26
AATC/ATTG	-	45	6																						51
AATG/ATTC	-	34	2	1																					37
AATT/AATT	-	94	6	1																					101
ACAG/CTGT	-	5	1																						6
ACAT/ATGT	-	20	1																						21
ACCG/CGGT	-	1																							1
ACCT/AGGT	-	3		1																					4
ACGC/CGTG	-	3																							3
ACGG/CCGT	-	4		1																					5
ACGT/ACGT	-	1																							1
ACTC/AGTG	-	8	2																						10
ACTG/AGTC	-	5																							5
AGAT/ATCT	-	26	4	1																					31
AGGC/CCTG	-	2																							2
ATCC/ATGG	-	6	1																						7
ATCG/ATCG	-	1		1																					2
ATGC/ATGC	-	1	1																						2
AAAAC/GTTTT	161	3	2																						166
AAAAG/CTTTT	87				1																				88
AAAAT/ATTTT	410	15																							425
AAACC/GGTTT	7	1																							8
AAACG/CGTTT	47	3																							50
AAACT/AGTTT	97	4	1																						102
AAAGC/CTTTG	10	1																							11
AAAGG/CCTTT	23	2																							25
AAAGT/ACTTT	45																								45
AAATC/ATTTG	59	4																							63
AAATG/ATTTC	90	4																							94
AAATT/AATTT	333	7																							340
AACAC/GTGTT	16	3	1																						20
AACAG/CTGTT	25	2	2																						29
AACAT/ATGTT	44	5	1																						50
AACCC/GGGTT	141	29	7																						177
AACCG/CGGTT	4																								4
AACCT/AGGTT	11	3																							14
AACGC/CGTTG	4	1																							5
AACGG/CCGTT	9	2																							11
AACGT/ACGTT	34	1	1																						36
AACTC/AGTTG	13	1																							14
AACTG/AGTTC	13		1																						14
AACTT/AAGTT	38	3																							41
AAGAC/CTTGT	4	1																							5
AAGAG/CTCTT	20	6	1																						27
AAGAT/ATCTT	27	1																							28
AAGCC/CTTGG	1																								1
AAGCT/AGCTT	2																								2
AAGGC/CCTTG	3																								3
AAGGG/CCCTT	5																								5
AAGGT/ACCTT	8	1	1																						10
AAGTC/ACTTG	7	1																							8
AAGTG/ACTTC	14	1																							15
AATAC/ATTGT	84	6																							90
AATAG/ATTCT	84	6																							90
AATAT/ATATT	144	4																							148
AATCC/ATTGG	18	1																							19
AATCG/ATTCG	7	2																							9
AATCT/AGATT	34	3																							37
AATGC/ATTGC	8																								8
AATGG/ATTCC	18																								18
AATGT/ACATT	63	3																							66
AATTC/AATTG	68	7																							75
ACACC/GGTGT	1	1																							2
ACACG/CGTGT	2	1																							3
ACACT/AGTGT	17	1																							18
ACAGC/CTGTG	1	1																							2
ACAGG/CCTGT	4																								4
ACAGT/ACTGT	23	3																							26
ACATC/ATGTG	17																								17
ACATG/ATGTC	16																								16
ACCAG/CTGGT	7																								7
ACCAT/ATGGT	1																								1
ACCCC/GGGGT		1																							1
ACCCT/AGGGT	7																								7
ACCGG/CCGGT		2																							2
ACCTC/AGGTG	1																								1
ACCTG/AGGTC	1																								1
ACGAG/CGTCT	2																								2
ACGAT/ATCGT	10																								10
ACGCG/CGCGT	7																								7
ACGCT/AGCGT	1																								1
ACGGC/CCGTG	1																								1
ACGGG/CCCGT	4	1																							5
ACGTC/ACGTG	4	1																							5
ACTAG/AGTCT	12	1																							13
ACTAT/AGTAT	33																								33
ACTCC/AGTGG	3																								3
ACTCG/AGTCG	4																								4
ACTCT/AGAGT	7	3																							10
ACTGC/AGTGC	2																								2
ACTGG/AGTCC	3	1	1																						5
AGAGC/CTCTG	3	1																							4
AGAGG/CCTCT	5																								5
AGATC/ATCTG	11	1																							12
AGATG/ATCTC	10																								10
AGCAT/ATGCT	1																								1
AGCCC/CTGGG	1																								1
AGCCG/CGGCT	1																								1
AGCCT/AGGCT	1																								1
AGCGC/CGCTG	1																								1
AGCGG/CCGCT	1																								1
AGGAT/ATCCT	13																								13
AGGCC/CCTGG			1																						1
AGGCG/CCTCG	1																								1
AGGGC/CCCTG	6																								6
AGGGG/CCCCT	1																								1
ATATC/ATATG	37	7	1																						45
ATCCC/ATGGG	4		1																						5
ATCCG/ATCGG	4		1																						5
ATCGC/ATGCG	1																								1
ATGCC/ATGGC	1																								1
CCCCG/CGGGG	1																								1
CCCGG/CCGGG	1																								1
CCGCG/CGCGG	4	2	1																						7
AAAAAC/GTTTTT	7																								7
AAAAAG/CTTTTT	2																								2
AAAAAT/ATTTTT	14																								14
AAAACG/CGTTTT	2		1																						3
AAAACT/AGTTTT	3																								3
AAAAGC/CTTTTG	2																								2
AAAAGT/ACTTTT	3																								3
AAAATC/ATTTTG	2	1																							3
AAAATG/ATTTTC	4																								4
AAAATT/AATTTT	15																								15
AAACAC/GTGTTT	1																								1
AAACAG/CTGTTT	5	1																							6
AAACCG/CGGTTT	3																								3
AAACGC/CGTTTG	1																								1
AAACTC/AGTTTG	1																								1
AAACTG/AGTTTC	1																								1
AAAGAG/CTCTTT	2																								2
AAAGAT/ATCTTT	1																								1
AAAGCC/CTTTGG	1																								1
AAAGCG/CGCTTT	1																								1
AAAGGC/CCTTTG	1																								1
AAAGGG/CCCTTT	2																								2
AAAGTC/ACTTTG	1	1																							2
AAATAC/ATTTGT	4																								4
AAATAG/ATTTCT	1																								1
AAATAT/ATATTT	2																								2
AAATCC/ATTTGG	1																								1
AAATCG/ATTTCG	1																								1
AAATCT/AGATTT	3																								3
AAATGC/ATTTGC	1																								1
AAATGG/ATTTCC	4																								4
AAATGT/ACATTT	4																								4
AAATTC/AATTTG	6																								6
AAATTG/AATTTC	5																								5
AAATTT/AAATTT	2																								2
AACAAG/CTTGTT	1																								1
AACAAT/ATTGTT	11																								11
AACACC/GGTGTT	1	1																							2
AACACT/AGTGTT	1																								1
AACAGC/CTGTTG	3																								3
AACAGT/ACTGTT	4	1																							5
AACATC/ATGTTG	5																								5
AACATG/ATGTTC	3																								3
AACATT/AATGTT	3																								3
AACCAC/GGTTGT	1																								1
AACCAG/CTGGTT		1																							1
AACCAT/ATGGTT	1																								1
AACCGT/ACGGTT	1																								1
AACCTC/AGGTTG	2																								2
AACCTG/AGGTTC	1																								1
AACCTT/AAGGTT	1																								1
AACGAT/ATCGTT	3																								3
AACGCC/CGTTGG	1																								1
AACGCG/CGCGTT	1	2																							3
AACGCT/AGCGTT		1																							1
AACGGC/CCGTTG	2																								2
AACGGG/CCCGTT	1	1																							2
AACGTC/ACGTTG	1	1																							2
AACGTT/AACGTT	1																								1
AACTAC/AGTTGT	2																								2
AACTAG/AGTTCT	2																								2
AACTAT/AGTTAT	2																								2
AACTCC/AGTTGG	2																								2
AACTCT/AGAGTT	2																								2
AACTGT/ACAGTT	1																								1
AACTTC/AAGTTG	2																								2
AACTTG/AAGTTC	3	1																							4
AAGACG/CGTCTT	4																								4
AAGAGC/CTCTTG	1																								1
AAGAGG/CCTCTT	2																								2
AAGAGT/ACTCTT	1																								1
AAGATC/ATCTTG	2																								2
AAGATG/ATCTTC	5																								5
AAGATT/AATCTT	3																								3
AAGCCG/CGGCTT	1																								1
AAGCGG/CCGCTT	1																								1
AAGCTG/AGCTTC		1																							1
AAGGAC/CCTTGT	2	1																							3
AAGGAG/CCTTCT	2	1																							3
AAGGAT/ATCCTT	2																								2
AAGGCG/CCTTCG	3	1																							4
AAGGGT/ACCCTT		1																							1
AAGGTC/ACCTTG	3																								3
AAGTAC/ACTTGT	1																								1
AAGTAG/ACTTCT	2																								2
AAGTAT/ACTTAT	3																								3
AAGTCT/ACTTAG	4																								4
AAGTGG/ACTTCC	3																								3
AAGTGT/ACACTT	2																								2
AATACC/ATTGGT	4	1																							5
AATACG/ATTCGT	1																								1
AATACT/AGTATT	7																								7
AATAGG/ATTCCT	1																								1
AATAGT/ACTATT	3	1																							4
AATATC/ATATTG	3																								3
AATCAG/ATTCTG	3																								3
AATCAT/ATGATT	2																								2
AATCCG/ATTCGG	1																								1
AATCCT/AGGATT	4																								4
AATCGT/ACGATT	2																								2
AATCTG/AGATTC	1																								1
AATGAC/ATTGTC	2																								2
AATGAG/ATTCTC	2																								2
AATGAT/ATCATT	3																								3
AATGCT/AGCATT	1																								1
AATGGG/ATTCCC	1																								1
AATGGT/ACCATT	1																								1
AATGTC/ACATTG	2																								2
AATTAC/AATTGT	8																								8
AATTAG/AATTCT	2																								2
AATTAT/AATTAT	1																								1
AATTCC/AATTGG	4																								4
ACACAT/ATGTGT	1																								1
ACACCG/CGGTGT	1																								1
ACACGC/CGTGTG	1																								1
ACAGAT/ATCTGT	1																								1
ACAGCC/CTGTGG		1																							1
ACAGCT/AGCTGT		1																							1
ACAGTC/ACTGTG	2																								2
ACATAG/ATGTCT	4																								4
ACATAT/ATATGT	2																								2
ACATCG/ATGTCG	6																								6
ACATGG/ATGTCC	1																								1
ACCACG/CGTGGT		1																							1
ACCACT/AGTGGT	1																								1
ACCAGC/CTGGTG	1		1																						2
ACCATC/ATGGTG	1																								1
ACCCGC/CGGGTG	2		1																						3
ACCCGG/CCGGGT	2																								2
ACCCTC/AGGGTG	1																								1
ACCGAT/ATCGGT		1																							1
ACCGCC/CGGTGG	2																								2
ACCGGC/CCGGTG	1																								1
ACCGGG/CCCGGT	1																								1
ACCGTG/ACGGTC	1																								1
ACCTAT/AGGTAT	1																								1
ACCTCC/AGGTGG	1																								1
ACCTGC/AGGTGC	1																								1
ACGACT/AGTCGT		1																							1
ACGAGC/CGTGCT	6	3																							9
ACGAGG/CCTCGT	2	1																							3
ACGATC/ATCGTG		1																							1
ACGATG/ATCGTC	3																								3
ACGCCG/CGGCGT	19	7																							26
ACGCGT/ACGCGT	1																								1
ACGCTG/AGCGTC	3																								3
ACGGAG/CCGTCT		2																							2
ACGGCG/CCGTCG	5	1																							6
ACGGCT/AGCCGT	1																								1
ACGGGC/CCCGTG	1																								1
ACGTAG/ACGTCT	3																								3
ACGTCG/ACGTCG	1																								1
ACTAGT/ACTAGT	3																								3
ACTATC/AGTGAT	2																								2
ACTATG/AGTCAT	1																								1
ACTCTC/AGAGTG	1																								1
ACTCTG/AGAGTC	1																								1
ACTGAG/AGTCTC	2																								2
ACTGAT/AGTATC	1																								1
ACTGCC/AGTGGC	1																								1
AGAGGC/CCTCTG				1																					1
AGAGGG/CCCTCT	1																								1
AGATAT/ATATCT	3																								3
AGATCC/ATCTGG	1																								1
AGATGC/ATCTGC	1																								1
AGATGG/ATCTCC	1																								1
AGCAGG/CCTGCT	3																								3
AGCATC/ATGCTG	1	1																							2
AGCATG/ATGCTC	4																								4
AGCCAT/ATGGCT	1																								1
AGCCGC/CGGCTG	2	1																							3
AGCGGC/CCGCTG	3																								3
AGGATC/ATCCTG	1	1																							2
AGGATG/ATCCTC	2																								2
AGGCAT/ATGCCT	1																								1
AGGCGG/CCGCCT	2																								2
AGGGCG/CCCTCG	1																								1
ATATCC/ATATGG	1																								1
ATATCG/ATATCG	1																								1
ATCATG/ATCATG	2																								2
ATCCCG/ATCGGG	1																								1
ATCGGC/ATGCCG		1																							1
ATGCCC/ATGGGC	1																								1
CCCCGG/CCGGGG		1																							1
CCCGCG/CGCGGG	1																								1
