Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-12/megassr/results/hub_GCA_032191455.1/fasta/hub_GCA_032191455.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              2335
Total size of examined sequences (bp):           5908979
Total number of identified SSRs:                 55
Number of SSR containing sequences:              51
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	3
4	3
5	35
6	11

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AT	-	-	-	3	3
AAT	-	-	1		1
TAA	-	-	1		1
TTA	-	-		1	1
AAAT	-	1			1
ATTT	-	1			1
TTAA	-	1			1
AAAAG	1				1
AAAGT	1				1
AAATT	2				2
AAGAA	1				1
AATAA	1				1
AATTT	1				1
ACAAA	1				1
ACTAA	1				1
ACTAT	1				1
AGAAA	1				1
ATAAA	3				3
ATTAA	1				1
ATTTT	1				1
CAATT	1				1
GAAGT	1				1
TAAAA	1				1
TAATA	1				1
TAATT	1				1
TATTA	1				1
TCTTG	1				1
TTAAA	2				2
TTAAT	1				1
TTCTT	1				1
TTTAA	1				1
TTTCT	3				3
TTTTA	4				4
ACTATT		1			1
AGTAAA	1				1
ATCACT	1				1
ATTTTA	1				1
GTTTTA	1				1
TAAAAC	1				1
TGAAAA	1				1
TTAAAA	1				1
TTACCG	1				1
TTTAAT	1				1
TTTTTA	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	3	3
AAT/ATT	-	-	2	1	3
AAAT/ATTT	-	2			2
AATT/AATT	-	1			1
AAAAC/GTTTT	1				1
AAAAG/CTTTT	7				7
AAAAT/ATTTT	10				10
AAACT/AGTTT	1				1
AAAGT/ACTTT	1				1
AAATT/AATTT	9				9
AAGAC/CTTGT	1				1
AAGTG/ACTTC	1				1
AATAT/ATATT	2				2
AATTC/AATTG	1				1
ACTAT/AGTAT	1				1
AAAAAT/ATTTTT	1				1
AAAACT/AGTTTT	2				2
AAAAGT/ACTTTT	1				1
AAAATG/ATTTTC	1				1
AAAATT/AATTTT	3				3
AACGGT/ACCGTT	1				1
AATAGT/ACTATT		1			1
ACTATC/AGTGAT	1				1
