Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-34/megassr/results/hub_GCA_031288815.1/fasta/hub_GCA_031288815.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              368
Total size of examined sequences (bp):           2416861
Total number of identified SSRs:                 35
Number of SSR containing sequences:              32
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	3
3	13
4	1
5	12
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1		1
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1	1	2
CCG	-	-	2																		2
CGC	-	-	1																		1
CGG	-	-	2																		2
CTC	-	-	1																		1
GCC	-	-	2																		2
GGC	-	-	2																		2
GGT	-	-		1																	1
TCA	-	-	1																		1
TCC	-	-	1																		1
CGGC	-		1																		1
CCCTC	1																				1
CCGGG	1																				1
CTCCC	1																				1
GAGGG	1																				1
GCCGC	1																				1
GCCGG	2																				2
GCCTG	1																				1
GCTCA	1																				1
GGCCC	1																				1
GGCGG	1																				1
TCCCC	1																				1
AGGGCC	1																				1
CCAGTT	1																				1
GATTCT		1																			1
GCCCTG	1																				1
GCGGGA	1																				1
TCAAAA	1																				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		2	1	3
ACC/GGT	-	-		1																	1
AGG/CCT	-	-	2																		2
ATC/ATG	-	-	1																		1
CCG/CGG	-	-	9																		9
CCGG/CCGG	-		1																		1
AGCTC/AGCTG	1																				1
AGGCC/CCTGG	1																				1
AGGGG/CCCCT	4																				4
CCCCG/CGGGG	1																				1
CCCGG/CCGGG	4																				4
CCGCG/CGCGG	1																				1
AAAATC/ATTTTG	1																				1
AACTGG/AGTTCC	1																				1
AATCAG/ATTCTG		1																			1
AGCGGG/CCCGCT	1																				1
AGGGCC/CCCTGG	2																				2
