Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-33/megassr/results/hub_GCA_031288645.1/fasta/hub_GCA_031288645.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              339
Total size of examined sequences (bp):           1970655
Total number of identified SSRs:                 11
Number of SSR containing sequences:              11
Number of sequences containing more than 1 SSR:  0
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	4
5	5
6	2

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	total
CCA	-	-	1	1
CCG	-	-	1	1
CGC	-	-	1	1
GGC	-	-	1	1
CGGGG	1			1
GAACG	1			1
GCCCG	1			1
GGAGG	1			1
TTTGA	1			1
GCGGCC	1			1
TCCTGG	1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	total
ACC/GGT	-	-	1	1
CCG/CGG	-	-	3	3
AAATC/ATTTG	1			1
AACGG/CCGTT	1			1
AGGGG/CCCCT	1			1
CCCCG/CGGGG	1			1
CCCGG/CCGGG	1			1
ACCAGG/CCTGGT	1			1
CCGCGG/CCGCGG	1			1
