Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-32/megassr/results/hub_GCA_031288575.1/fasta/hub_GCA_031288575.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              321
Total size of examined sequences (bp):           2261969
Total number of identified SSRs:                 31
Number of SSR containing sequences:              27
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	3
3	8
5	15
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1																											1														1	3
CAA	-	-	1																																																										1
CCG	-	-	1																																																										1
CGC	-	-	1																																																										1
CGG	-	-		1																																																									1
GCC	-	-	1																																																										1
GCG	-	-	2																																																										2
GGC	-	-	1																																																										1
AAAAT	1																																																												1
AATAT	1																																																												1
AGCGG	1																																																												1
CCCCG	2																																																												2
CCCGG	1	1																																																											2
CCGGG	1																																																												1
CGGGG	1																																																												1
GAACG	1																																																												1
GCAAA	1																																																												1
GCCCG	1																																																												1
GGGGA	1																																																												1
TTCCG	1																																																												1
TTTGT	1																																																												1
CCTTGC	1																																																												1
GGACGG	1																																																												1
TTCTTG	1																																																												1
TTTCTT	1																																																												1
TTTGCC	1																																																												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1																											1														1	3
AAC/GTT	-	-	1																																																										1
CCG/CGG	-	-	6	1																																																									7
AAAAC/GTTTT	1																																																												1
AAAAT/ATTTT	1																																																												1
AAAGC/CTTTG	1																																																												1
AACGG/CCGTT	2																																																												2
AATAT/ATATT	1																																																												1
AGCGG/CCGCT	1																																																												1
AGGGG/CCCCT	1																																																												1
CCCCG/CGGGG	3																																																												3
CCCGG/CCGGG	3	1																																																											4
AAAAAG/CTTTTT	1																																																												1
AAAGGC/CCTTTG	1																																																												1
AACAAG/CTTGTT	1																																																												1
AAGGGC/CCCTTG	1																																																												1
ACGGGG/CCCCGT	1																																																												1
