Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-31/megassr/results/hub_GCA_031288495.1/fasta/hub_GCA_031288495.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              252
Total size of examined sequences (bp):           2719887
Total number of identified SSRs:                 19
Number of SSR containing sequences:              18
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	3
2	1
3	4
5	7
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2		2
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1	1
TG	-	-	-	1																1
CCG	-	-	1																	1
CGC	-	-	1																	1
GCG	-	-	1																	1
GGC	-	-	1																	1
AAGGC	1																			1
CCCTG	1																			1
CTATC	1																			1
CTTGG	1																			1
GGCTT	1																			1
GGTAC	1																			1
GGTAT	1																			1
AGGGCC	1																			1
GGATGT	1																			1
GGCTTC	1																			1
TCAATA	1																			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	1	3
AC/GT	-	-	-	1																1
CCG/CGG	-	-	4																	4
AAGCC/CTTGG	2																			2
AAGGC/CCTTG	1																			1
ACCAT/ATGGT	1																			1
ACCGT/ACGGT	1																			1
AGGAT/ATCCT	1																			1
AGGGC/CCCTG	1																			1
AAGCCG/CGGCTT	1																			1
AATATC/ATATTG	1																			1
ACATCC/ATGTGG	1																			1
AGGGCC/CCCTGG	1																			1
