Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-30/megassr/results/hub_GCA_031288275.1/fasta/hub_GCA_031288275.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              425
Total size of examined sequences (bp):           2447891
Total number of identified SSRs:                 38
Number of SSR containing sequences:              36
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	4
2	3
3	13
4	2
5	11
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1						2
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1						1	2
CT	-	-	-	1																1					2
GC	-	-	-	1																					1
AGG	-	-		1																					1
CGC	-	-	2																						2
GAT	-	-	1																						1
GCC	-	-		1																					1
GCG	-	-	3																						3
GGC	-	-	1	2																					3
TCC	-	-	1																						1
TGA	-	-	1																						1
CCTG	-		1																						1
GAAT	-	1																							1
CCCGG	1																								1
CGCCC	1																								1
CGGGC	1																								1
CGGGG	1																								1
GAAAA	1																								1
GCCCC	1																								1
GGGCG	2																								2
GGGGA	1																								1
TCGAA	1																								1
TTCCG	1																								1
AGTTCC	1																								1
GCCCCT	1																								1
GGCCCT	1																								1
GGGCCA	1																								1
TCCGCC	1																								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	1					1	4
AG/CT	-	-	-	1																1					2
CG/CG	-	-	-	1																					1
AGG/CCT	-	-	1	1																					2
ATC/ATG	-	-	2																						2
CCG/CGG	-	-	6	3																					9
AATG/ATTC	-	1																							1
AGGC/CCTG	-		1																						1
AAAAG/CTTTT	1																								1
AACGG/CCGTT	1																								1
AATCG/ATTCG	1																								1
AGGGG/CCCCT	1																								1
CCCCG/CGGGG	5																								5
CCCGG/CCGGG	2																								2
AACTGG/AGTTCC	1																								1
AGGCGG/CCGCCT	1																								1
AGGGCC/CCCTGG	2																								2
AGGGGC/CCCCTG	1																								1
