Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-29/megassr/results/hub_GCA_031288155.1/fasta/hub_GCA_031288155.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              394
Total size of examined sequences (bp):           2285904
Total number of identified SSRs:                 34
Number of SSR containing sequences:              34
Number of sequences containing more than 1 SSR:  0
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	6
2	1
3	14
5	11
6	2

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1		1	2	4
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		2			2
GC	-	-	-	1																		1
CAT	-	-	1																			1
CCG	-	-	4																			4
CGC	-	-	2	1																		3
CGG	-	-	1																			1
GCC	-	-	1																			1
GCG	-	-		1																		1
GGC	-	-	3																			3
AACGG	1																					1
AGGGG	1																					1
CAACA	1																					1
CACTA															1							1
CCCCT	1																					1
CCGCC	1																					1
CCGGC	1																					1
CCGGG	1																					1
CGGAC	1																					1
GCGCC	1																					1
GGCCG	1																					1
CTCCGC	1																					1
GGGCCA	1																					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	2	1	2	6
CG/CG	-	-	-	1																		1
ATC/ATG	-	-	1																			1
CCG/CGG	-	-	11	2																		13
AACAC/GTGTT	1																					1
AACGG/CCGTT	1																					1
ACACT/AGTGT															1							1
ACCGG/CCGGT	1																					1
AGGGG/CCCCT	2																					2
CCCCG/CGGGG	1																					1
CCCGG/CCGGG	3																					3
CCGCG/CGCGG	1																					1
AGGCGG/CCGCCT	1																					1
AGGGCC/CCCTGG	1																					1
