Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-28/megassr/results/hub_GCA_031288135.1/fasta/hub_GCA_031288135.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              317
Total size of examined sequences (bp):           1786446
Total number of identified SSRs:                 37
Number of SSR containing sequences:              32
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	13
3	8
5	8
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1			1					2	1																								1																											1	7
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1		1	1						1				1				1																																													6
AAT	-	-												1																																																																		1
CGC	-	-	1																																																																													1
CGG	-	-	1																																																																													1
GCG	-	-	1																																																																													1
GGC	-	-	4																																																																													4
CCCCG	2																																																																															2
CGGTC	1																																																																															1
CTCAC	1																																																																															1
GCGGG	1																																																																															1
GGACC	1																																																																															1
GGCGC	1																																																																															1
GTCCC	1																																																																															1
CCCGAG	1																																																																															1
CGCGGA		1																																																																														1
CGGCAT	1																																																																															1
CTTTGC	1																																																																															1
GAACCG	1																																																																															1
GCCCAG	1																																																																															1
GTACCG	1																																																																															1
GTTTTT	1																																																																															1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1	1	1	1					3	1			1				1																	1																											1	13
AAT/ATT	-	-												1																																																																		1
CCG/CGG	-	-	7																																																																													7
ACCGG/CCGGT	2																																																																															2
ACCTC/AGGTG	1																																																																															1
ACGGG/CCCGT	1																																																																															1
CCCCG/CGGGG	3																																																																															3
CCGCG/CGCGG	1																																																																															1
AAAAAC/GTTTTT	1																																																																															1
AAAGGC/CCTTTG	1																																																																															1
AACCGG/CCGGTT	1																																																																															1
ACCGGT/ACCGGT	1																																																																															1
ACGCGG/CCGCGT		1																																																																														1
AGCCCG/CGGGCT	1																																																																															1
AGGCCC/CCTGGG	1																																																																															1
ATCGGC/ATGCCG	1																																																																															1
