Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-27/megassr/results/hub_GCA_031288115.1/fasta/hub_GCA_031288115.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              328
Total size of examined sequences (bp):           2161528
Total number of identified SSRs:                 25
Number of SSR containing sequences:              25
Number of sequences containing more than 1 SSR:  0
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	7
3	5
4	3
5	5
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1		1				1																																3
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2			1																																		1	4
AGG	-	-	1																																																					1
CCG	-	-	2																																																					2
CGC	-	-	1																																																					1
CGG	-	-	1																																																					1
AAGC	-	1																																																						1
CCAA	-	1																																																						1
TTGC	-																								1																															1
CGGCG	1																																																							1
CGTAA	1																																																							1
GCCGC	1																																																							1
GCGCC	1																																																							1
GGGGA	1																																																							1
CCGATG	1																																																							1
CGGCAT	1																																																							1
GGCAAA	1																																																							1
GGCCGC	1																																																							1
TTTCTT	1																																																							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3		1	1			1																															1	7
AGG/CCT	-	-	1																																																					1
CCG/CGG	-	-	4																																																					4
AACC/GGTT	-	1																																																						1
AAGC/CTTG	-	1																							1																															2
AACGT/ACGTT	1																																																							1
AGGGG/CCCCT	1																																																							1
CCGCG/CGCGG	3																																																							3
AAAAAG/CTTTTT	1																																																							1
AAAGGC/CCTTTG	1																																																							1
ATCGGC/ATGCCG	2																																																							2
CCGCGG/CCGCGG	1																																																							1
