Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-26/megassr/results/hub_GCA_031288005.1/fasta/hub_GCA_031288005.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              102
Total size of examined sequences (bp):           1835070
Total number of identified SSRs:                 32
Number of SSR containing sequences:              25
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	15
3	7
4	1
5	4
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1		1			2	1								1																																		1													1			1											9
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1	1			1																																																															1						1	6
ATG	-	-	1																																																																																										1
CGG	-	-	4	1																																																																																									5
GCC	-	-	1																																																																																										1
TTTG	-	1																																																																																											1
CGGGG	1																																																																																												1
CTAAC			1																																																																																										1
GCGGC	1																																																																																												1
TCCCC	1																																																																																												1
AGCCAT	1																																																																																												1
CATTTT		1																																																																																											1
CCATTG		1																																																																																											1
CGGCTT	1																																																																																												1
TTTTCC	1																																																																																												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	1	2			3	1								1																																		1													1			1				1						1	15
ATC/ATG	-	-	1																																																																																										1
CCG/CGG	-	-	5	1																																																																																									6
AAAC/GTTT	-	1																																																																																											1
AACCT/AGGTT			1																																																																																										1
AGGGG/CCCCT	1																																																																																												1
CCCCG/CGGGG	1																																																																																												1
CCGCG/CGCGG	1																																																																																												1
AAAAGG/CCTTTT	1																																																																																												1
AAAATG/ATTTTC		1																																																																																											1
AAGCCG/CGGCTT	1																																																																																												1
AATGGC/ATTGCC		1																																																																																											1
AGCCAT/ATGGCT	1																																																																																												1
