Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-27/megassr/results/hub_GCA_031286145.1/fasta/hub_GCA_031286145.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              299
Total size of examined sequences (bp):           2592170
Total number of identified SSRs:                 35
Number of SSR containing sequences:              28
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	5
2	7
3	11
5	6
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1	1
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1	1			2
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		2				2
AT	-	-	-	3																			3
GC	-	-	-	1																			1
GT	-	-	-			1																	1
TA	-	-	-	2																			2
ATT	-	-							1														1
CGC	-	-	1																				1
CGG	-	-	1																				1
GAG	-	-			1																		1
GCG	-	-	2			1																	3
GGA	-	-											1										1
GGC	-	-	1																				1
TCA	-	-	1																				1
TGA	-	-	1																				1
CCTCC	1																						1
CGCGG	2																						2
GGCAG	1																						1
GGCGC	1																						1
GGGGC	1																						1
ATGAAA	1																						1
CCCACG	1																						1
CCGCGC	1																						1
TATAAC	1																						1
TATTTT		1																					1
TTTTCC	1																						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1	1
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		3	1			4
AC/GT	-	-	-			1																	1
AT/AT	-	-	-	5																			5
CG/CG	-	-	-	1																			1
AAT/ATT	-	-							1														1
AGG/CCT	-	-			1								1										2
ATC/ATG	-	-	2																				2
CCG/CGG	-	-	5			1																	6
AGGGC/CCCTG	1																						1
AGGGG/CCCCT	1																						1
CCCCG/CGGGG	1																						1
CCGCG/CGCGG	3																						3
AAAAAT/ATTTTT		1																					1
AAAAGG/CCTTTT	1																						1
AAAATG/ATTTTC	1																						1
AACTAT/AGTTAT	1																						1
ACGCCC/CGTGGG	1																						1
CCCGCG/CGCGGG	1																						1
