Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-26/megassr/results/hub_GCA_031286125.1/fasta/hub_GCA_031286125.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              375
Total size of examined sequences (bp):           1926265
Total number of identified SSRs:                 12
Number of SSR containing sequences:              12
Number of sequences containing more than 1 SSR:  0
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	1
4	1
5	2
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
AT	-	-	-	2											2
GC	-	-	-	1											1
TC	-	-	-											1	1
GGC	-	-	1												1
CCGC	-	1													1
CCGCC	1														1
TCTTC	1														1
AAGAAA	1														1
CGCGGC	1														1
GGAAAG	1														1
TTCCGC	1														1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
AG/CT	-	-	-											1	1
AT/AT	-	-	-	2											2
CG/CG	-	-	-	1											1
CCG/CGG	-	-	1												1
CCCG/CGGG	-	1													1
AAGAG/CTCTT	1														1
CCCCG/CGGGG	1														1
AAAAAG/CTTTTT	1														1
AAAGGG/CCCTTT	1														1
AAGCGG/CCGCTT	1														1
CCGCGG/CCGCGG	1														1
