Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-25/megassr/results/hub_GCA_031286095.1/fasta/hub_GCA_031286095.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              270
Total size of examined sequences (bp):           2774763
Total number of identified SSRs:                 27
Number of SSR containing sequences:              25
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	3
2	5
3	4
4	1
5	6
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1			1	3
GC	-	-	-	1																			1
TA	-	-	-	2																			2
TC	-	-	-								1								1				2
AAT	-	-	1																				1
ACG	-	-	1																				1
GCC	-	-	1																				1
GGC	-	-	1																				1
CAGA	-		1																				1
AATAG	1																						1
AATAT	1																						1
CCCGT	1																						1
CTTTT	1																						1
GCCCT	1																						1
TTTTC	1																						1
ATCTTC	1																						1
CAAATG	1																						1
CCGCCT	1																						1
GTAATT	1																						1
TAGGGA			1																				1
TCTGCG	1																						1
TTTCTT	1																						1
TTTTCC	1																						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1			1	3
AG/CT	-	-	-								1								1				2
AT/AT	-	-	-	2																			2
CG/CG	-	-	-	1																			1
AAT/ATT	-	-	1																				1
ACG/CGT	-	-	1																				1
CCG/CGG	-	-	2																				2
ACAG/CTGT	-		1																				1
AAAAG/CTTTT	2																						2
AATAG/ATTCT	1																						1
AATAT/ATATT	1																						1
ACGGG/CCCGT	1																						1
AGGGC/CCCTG	1																						1
AAAAAG/CTTTTT	1																						1
AAAAGG/CCTTTT	1																						1
AAATGC/ATTTGC	1																						1
AAGATG/ATCTTC	1																						1
AATTAC/AATTGT	1																						1
ACGCAG/CGTCTG	1																						1
AGGCGG/CCGCCT	1																						1
AGGGAT/ATCCCT			1																				1
